Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00037 AATGAAATTGGAAAAGTATTTAGATTTGGAGAGAAAGGAGGAGTAGAGTTTCTCTCTCTTCGAATCCTCTCCACAGGTCGTTGCGCTCTCCCTTCACCAGCAAGCATTCAGCAATTTCTTCATCAGATCTACACTCTCCACCGCCCTCATTCTCAGTTGAACATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAAGTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGCACGACAAACAAAAGAGTTGCTCGCTTCCTGTGAGAGTATTGAATGGCAGGTGGACGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCTGAACTTGAGAAACGAAGGAGGTGGACGAGTACAGCTAGGATGCAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGAAAGGAGCAAACTGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCCAATGCACTTGAAACAGAAAAATCAAACTTATATACAGCCCACCAAGAAAATGATGACTTCATCTCGTCCGAATCAGATAGACAGCTGCTTCTAATAAGGCAGCAGGACGAGGAGTTGGATGAATTGAGTGCGAGTGTGGTGAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATTGACAACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAATAGCTGTGGTGATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTATTCTTGGTAGCTTTGTTCATCATCCTTTTTGTGTTGATGGACTATCCGAGTTCTAAGGTACGGCGCCAAAATCTGCCCCCTCGCCTAAGACCGACGATTGATGAAAGAGACGAACAGTTCTTGCAGCTAAACCTCCATGGGAGAATCGTGAAAGATAATCTGACAGTTCAAGATAATGTAATGGCATTTCCAATGAGGTTGTTATCCACTTATCCAAGAACCAGTAAGCTTCAATCTCCAAAATATGCAAAAACAAGAGTTTCGGTTCCCTGCCTCGCAGCATGCTTTTACAACACTTATGTGCTCCATGGTCAACTTCACCATCAGTCTTTTTCCTTCTATGTGACCAAACCTTCAGTGATAAAGAACTTCAAGAAGATGGCCTTATCCATTAGGAGCAGTGTGGAAGAGAGTCCATTTGATCCTCCTTCAAATAGCTCGAATGGCAGAACAAGACTGACACGGATTATTTCAGCTATTCAAACCAAGTTGAATGCGAGAATTAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGCTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCCCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAAGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATTTA 1680 42.26 NEIGKVFRFGEKGGVEFLSLRILSTGRCALPSPASIQQFLHQIYTLHRPHSQLNMPSAQDPFYVVKDEIQESIDKVQSSFHQWERISSDPGERARQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDHAELEKRRRWTSTARMQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNALETEKSNLYTAHQENDDFISSESDRQLLLIRQQDEELDELSASVVRIGGVGLTIHEELLAQDKIIDNLGMEMDSTSNRLDFVQKKIAVVMKKASAKGQIMMILFLVALFIILFVLMDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTVQDNVMAFPMRLLSTYPRTSKLQSPKYAKTRVSVPCLAACFYNTYVLHGQLHHQSFSFYVTKPSVIKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 191426 197437 - Cp4.1LG12g00490.1 Cpe12g00037 478034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00037 560 SMART tSNARE_6 203 270 IPR000727 -
Cpe12g00037 560 Pfam SNARE domain 245 296 IPR000727 -
Cpe12g00037 560 SUPERFAMILY t-snare proteins 59 154 IPR010989 GO:0016020|GO:0016192
Cpe12g00037 560 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Cpe12g00037 560 CDD SNARE_Qc 211 268 - -
Cpe12g00037 560 PANTHER SYNTAXIN PROTEIN 55 297 - -
Cpe12g00037 560 Pfam Syntaxin 6, N-terminal 60 153 IPR015260 GO:0016020|GO:0048193
Cpe12g00037 560 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe12g00037 560 Gene3D - 56 158 - -
Cpe12g00037 560 PANTHER SYNTAXIN 55 297 IPR045242 -
Cpe12g00037 560 Gene3D - 215 279 - -
Cpe12g00037 560 Pfam Protein of unknown function (DUF565) 482 540 IPR007572 -
Cpe12g00037 560 SUPERFAMILY SNARE fusion complex 207 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00037 Cpe-Chr12:191426 Cpe02g00792 Cpe-Chr2:5071070 8.47E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00037 K08500 - bhj:120067784 424.091