Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00049 ATGGCTACTTTAAACTTAGGCTCAGCTTCTCACTTTGTTGACCAGCTTCAACAACGCCCTGATCTCCACCTAGATTCGCCGCCCAGCTCCGATCATGTCACTAATCTCAACCACTTCAACGGCAGTGGCGGCTCCGGTGGTAGCGGAGATGCTATGGTTCGTCGACCGAGGGGTCGCCCAGCCGGGTCCAAGAACAAGCCAAAGCCACCCGTGATCATCACGCGCGAGAGCGCTAATACCCTCCGAGCTCATATCTTGGAAATCGGTAGCGGATATGATGTGTTCGAGGCTGTGGCTGGCTATGCGCGACGGCGACAACGAGGGATCTGTGTGTTGAGTGGAAGTGGGATAGTGAATAATGTTAGCTTACGACAACCGGCTGCGGCTGGATCCGTGTTGACGTTGCAAGGGAGGTTTGAGATTTTGTCCCTGTCGGGATCGTTCTTACCACCACCTGCTCCACCAGGTGCTACTAGTCTTACGATTTTCTTGGCCGGAGGTCAAGGACAAGTGGTCGGAGGGAATGTCGTGGGAGCTTTGATTGCGTCGGGGCCTGTCATCGTTATAGCATCGTCGTTCAGTAACGTTGCATACGAGAGGCTACCGTTGGATGAAGAAGAATTGTCGATGCCTGCAGCTGGTGGGGACGGAGATGGAGGCGAGGGCGGGGGCGGTGATGGCCACGACAACCCTTTTCCCGACGGATCTTCGGGTTTGCCCTTTCTAAATCTGCCTATGAATATGCCAAATCAGAATCAATTTTTTGGTTGA 771 53.83 MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVTNLNHFNGSGGSGGSGDAMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEIGSGYDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELSMPAAGGDGDGGEGGGGDGHDNPFPDGSSGLPFLNLPMNMPNQNQFFG 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 266568 267479 + Cp4.1LG12g00380.1 Cpe12g00049 478046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00049 256 MobiDBLite consensus disorder prediction 22 44 - -
Cpe12g00049 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cpe12g00049 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 210 - -
Cpe12g00049 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 253 - -
Cpe12g00049 256 Gene3D - 81 211 - -
Cpe12g00049 256 MobiDBLite consensus disorder prediction 20 71 - -
Cpe12g00049 256 MobiDBLite consensus disorder prediction 209 244 - -
Cpe12g00049 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 253 IPR014476 GO:0003680
Cpe12g00049 256 CDD DUF296 82 165 IPR005175 -
Cpe12g00049 256 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00183 Cpe-Chr5:963252 Cpe12g00049 Cpe-Chr12:266568 1.28E-85 dispersed
Cpe08g00854 Cpe-Chr8:6759896 Cpe12g00049 Cpe-Chr12:266568 9.75E-84 dispersed
Cpe12g00049 Cpe-Chr12:266568 Cpe15g00220 Cpe-Chr15:1903902 6.70E-89 dispersed
Cpe12g00049 Cpe-Chr12:266568 Cpe17g00234 Cpe-Chr17:1518658 2.33E-59 wgd
Cpe12g00049 Cpe-Chr12:266568 Cpe17g00291 Cpe-Chr17:1974212 4.16E-129 wgd
Cpe12g00049 Cpe-Chr12:266568 Cpe03g01656 Cpe-Chr3:12655423 9.83E-103 wgd
Cpe12g00049 Cpe-Chr12:266568 Cpe08g00456 Cpe-Chr8:2934971 3.14E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00049 - - csv:101203160 419.083