Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00050 ATGGAGGATATCCGCCAAAACCGTCTTCCTCCGTCGCAGCCACTGCCACCGCCACCGGCCGTGGAAGATATTCCTCCATACTTCCGGTGCCCTATTTCCATGGAGGTTATGCATGATCCTGTCACGATTTCCACCGGTGTTTCCTTTGAAAGAGCCAATATTGAGAAGTGGTTCTTCACTTACAACAAGAAAACTTGCCCTGCGACCATGCAAATCATTGTCAACTTTGATATCACTCCAAATTATACACTCAAAAGGCTCATACTCTCTTGGAAAATGAATGAATCTTGCTCCTCCGCCTCCTCCTCGTCGCCCGGACCGCCATCGATGGAGTACGATGATGTTGTGGCTCTCTTGAAAAACATCGAGTTGTCGCCGTTCAAAGCGAGTTCTTTGAAGAAACTACGGCTACTCATGGCCATCGACGATGTAGCGGCGGTCGGAGCGAAACCCATCTTTGTTCAAGCAAATGGGTTTGAAGTTCTTGTTGGATTAGTCACCCAAGTCGCCATTTGTGAAAGCTCCAATTTCGCTAATTTTGAAGCCTGCGAGGAGGCTTTAGGGGTATTATCTCAATTTCCATTTTCCAAAACCGAGAAGCTATTTGAGTTACTATCGAGACCAGAAGCGATCAAGTCAATGGCGATCGTTTTACAAAGAGGAAGCATAGAAGGACGATTTTATGCCATGGAATTACTCCAACAAATATCCAAAAAGGGTTATGATTATAACTCTTTAACGAAACATCATGCCATTGACCTGTTCAAGTCAATATTGGAGCTCGCGTCGGATGAGATAATCAAGAAAGCAAGTACTGTTAAGATGACAGACTCGTCCATAGCTACACAGTGTCGATACGGAACGTTATTCTCATCTGCCCTCGAACTTTTGATAGAAATCATGGAATCCTCTAAGAAATGTCGTCTTCTGTTGATTGAAGCTGGTGCTGTTTGCATCATGATCGACCTTCTTCCTGACTCGAACCGATCAAAGTGCGAGAAAATATTACACGTACTCAAACTTCTAAGCGATTGTGCGGAGGGACGGTTAGCCATGGCGGAGCATATCATGGGAATAGCGACGGTGACGAAGAAAATGAGTACATCAAATACAGCTACAAAAATTGGGGTGAAAATCTTATGGTTGATATGCAATTATCATCCTAGTGAGAGGGTTTTAGAGGAGATGATGGGTTGTGGCACAGTGAAGAAGCTGGTAGGGATCTTGAATGGCGATGGAAGATCTTCTTCAACCAAGGAGAAGGCCATGAAGATCATGAAGCTTCATGGGAGTTTTTGGAGGAGATTTCCTTGTTTTCCTTATGAATTTAGGGATTATTTTAAGTTGATAAATTAA 1356 43.73 MEDIRQNRLPPSQPLPPPPAVEDIPPYFRCPISMEVMHDPVTISTGVSFERANIEKWFFTYNKKTCPATMQIIVNFDITPNYTLKRLILSWKMNESCSSASSSSPGPPSMEYDDVVALLKNIELSPFKASSLKKLRLLMAIDDVAAVGAKPIFVQANGFEVLVGLVTQVAICESSNFANFEACEEALGVLSQFPFSKTEKLFELLSRPEAIKSMAIVLQRGSIEGRFYAMELLQQISKKGYDYNSLTKHHAIDLFKSILELASDEIIKKASTVKMTDSSIATQCRYGTLFSSALELLIEIMESSKKCRLLLIEAGAVCIMIDLLPDSNRSKCEKILHVLKLLSDCAEGRLAMAEHIMGIATVTKKMSTSNTATKIGVKILWLICNYHPSERVLEEMMGCGTVKKLVGILNGDGRSSSTKEKAMKIMKLHGSFWRRFPCFPYEFRDYFKLIN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 271851 273378 - Cp4.1LG12g00450.1 Cpe12g00050 478047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00050 451 ProSiteProfiles U-box domain profile. 23 98 IPR003613 GO:0004842|GO:0016567
Cpe12g00050 451 PANTHER WDSAM1 PROTEIN 24 449 IPR045185 GO:0061630
Cpe12g00050 451 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 449 - -
Cpe12g00050 451 SMART Ubox_2 27 91 IPR003613 GO:0004842|GO:0016567
Cpe12g00050 451 SUPERFAMILY ARM repeat 184 426 IPR016024 -
Cpe12g00050 451 MobiDBLite consensus disorder prediction 1 22 - -
Cpe12g00050 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 103 IPR013083 -
Cpe12g00050 451 SUPERFAMILY RING/U-box 21 94 - -
Cpe12g00050 451 Gene3D - 115 429 IPR011989 -
Cpe12g00050 451 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Cpe12g00050 451 CDD RING-Ubox_PUB 28 71 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00624 Cpe12g00050 CCT
Cpe03g01822 Cpe12g00050 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00050 Cpe-Chr12:271851 Cpe16g00824 Cpe-Chr16:7940610 2.51E-55 dispersed
Cpe12g00050 Cpe-Chr12:271851 Cpe03g01651 Cpe-Chr3:12635024 9.67E-149 wgd
Cpe12g00050 Cpe-Chr12:271851 Cpe08g00451 Cpe-Chr8:2910475 7.43E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00050 - - csv:101203652 750.355