Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00072 ATGGTGAAGAAACGGGTGCCGGATTGGCTCAATAGCTCTCTCTGGTCCTCCACTCCTGTTGACGACGATCGCCTCCACCGCTACACTTCGGAGCCGGCCACCACCATGTCGTCGCCGGAACCCGTCGTTGAACCTCCGGTTCCGGTTCCTCCTCCGTCTGCGAGCACCGTCGTTAGAACCGAGTCTCCCAAGTCTGATACTAGAGACTCCAGGGTTAATAACAATGTGAGCAACGACGATAATGACACTTCCTCAGGCCCTTCTGCTGAGGACGTATCTCGCCAGGCACAGCTTCTTGTTGAGTTGTCGAAGAAGGTCATAAATCTGCGTGAATTGCGTAAAATTTCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGCGCTCTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTCAAAGAAGAGCTTTTGATGAATCCTTCAGAAATTTCAAGGAGGTTGGAGAAAGCGAAAAGTTACGAGCATGATGAAACGAACAGAGGTCCACTCTCAAGGTCAGAAATAAGTCTAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGAGGCTCTGAGAAACATCTTAATCGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGCTTTGTTGAGTTGTTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGCGCCACAATCACAAAGTTGTCCCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAGGAGTTCAATTTTGCAGACAGCCTTCATATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTAGAAACACTTCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCTGGCGATTTTACAGCTAATCTCAAACTGCTTCAACACTATCCCGCAGCAAACATCAGTCATTTGCTCTACGTTGCGAACAAGTTGCGTAAACAGCCTTCGATCTGA 1269 46.18 MVKKRVPDWLNSSLWSSTPVDDDRLHRYTSEPATTMSSPEPVVEPPVPVPPPSASTVVRTESPKSDTRDSRVNNNVSNDDNDTSSGPSAEDVSRQAQLLVELSKKVINLRELRKISSQGIPDGPGIRSTVWKLLLGYLPPDRALWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNRGPLSRSEISLEEHPLSLGKTSIWNQYFQDSEIIEQIDRDEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPAANISHLLYVANKLRKQPSI 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 426482 431576 + Cp4.1LG12g00660.1 Cpe12g00072 478069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00072 422 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 227 419 - -
Cpe12g00072 422 SMART tbc_4 116 390 IPR000195 -
Cpe12g00072 422 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 301 418 IPR035969 -
Cpe12g00072 422 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 292 - -
Cpe12g00072 422 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 226 - -
Cpe12g00072 422 MobiDBLite consensus disorder prediction 1 92 - -
Cpe12g00072 422 Gene3D - 90 145 - -
Cpe12g00072 422 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 226 - -
Cpe12g00072 422 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 227 419 - -
Cpe12g00072 422 MobiDBLite consensus disorder prediction 69 92 - -
Cpe12g00072 422 MobiDBLite consensus disorder prediction 39 53 - -
Cpe12g00072 422 Pfam Rab-GTPase-TBC domain 126 386 IPR000195 -
Cpe12g00072 422 Gene3D - 300 421 - -
Cpe12g00072 422 ProSiteProfiles TBC/rab GAP domain profile. 121 364 IPR000195 -
Cpe12g00072 422 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 323 IPR035969 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00072 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 763.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00072 Cpe-Chr12:426482 Cpe14g00021 Cpe-Chr14:127916 8.89E-13 dispersed
Cpe08g00049 Cpe-Chr8:332835 Cpe12g00072 Cpe-Chr12:426482 5.44E-24 transposed
Cpe03g01198 Cpe-Chr3:9802024 Cpe12g00072 Cpe-Chr12:426482 5.23E-29 transposed
Cpe12g00072 Cpe-Chr12:426482 Cpe17g00267 Cpe-Chr17:1758952 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00072 Cpe_Chr12 FPKM 10.107144 12.274779 17.569069 16.148088 25.933052 24.749075 23.655901 21.905552 21.786022 20.221836