Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00073 TTGGAGTTTCGGTCGCATCGTATCAATAAATCTGTACTCTCACGAGCTCATTACACGATCCAAACATTTTTCTCCATCAGAGCTAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGACCAGCTCAGAACTTATTCTCAATCCTATCCTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATTGAGACATCTATAAACTCCCTCCGGATCAGTCTCAAGGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGATATTGATAAAGAGATAAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATTTGA 573 40.31 LEFRSHRINKSVLSRAHYTIQTFFSIRANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEELQKQKLIDFIDIDKEISELKMSVNTRGRLVATEFLKQFI 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 432523 436925 + Cp4.1LG12g00690.1 Cpe12g00073 478070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00073 190 PIRSF ARPC4 27 190 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cpe12g00073 190 PANTHER ARP2/3 COMPLEX 20 KD SUBUNIT 28 189 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cpe12g00073 190 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 28 188 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cpe12g00073 190 Gene3D - 27 189 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cpe12g00073 190 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4 28 189 - -
Cpe12g00073 190 SUPERFAMILY Arp2/3 complex subunits 30 189 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00073 K05755 ARPC4; actin related protein 2/3 complex, subunit 4 - csv:101204204 306.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009766 1 2 0 0 1 1 1 1 1 2 0 1 0 2 1 0 1 2 1 1 2 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00073 Cpe_Chr12 FPKM 10.621796 12.40427 14.690263 15.971512 14.576455 14.940768 13.510303 20.345558 19.367098 20.410046