Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00074 ATGGCGGACGTCTTAGGCGACGCCGGTGGCGGCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAATATACTCATTACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGGTACTGTCGTCTTAGAGGTTATAACGCTATTTACATATGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGTTCTCCAAAAGAGATTTGTGACAAGTACCACAAAATTCACAAAGAAGTTTACGATTGGTTTGGTATTAGTTTTGATGAATTTGGTCGCACATCATCATCACAGCAGACTGAAGTTTGTCAAGAAATATTTGGAAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATCTGCCCAACTCCAGGGTGTGAGTATGACTCTGCACGTGGTGATCAATGTGAAAAGTGCGGGAAACTACTTAATCCAACGGAATTGAAAGATCCCAGGTGCAAGGTCTGTCAAACATCCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGATAAACTTGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACAAGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTTTGGTTTGATGCACCAATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAGAATGTGGAGCTCTTTCAATTCATGGGCAAGGATAATGTTCCTTTCCACACTGTTATGTTTCCTTCTACACTGCTCGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATACTTAAACTACGAAGCAGGAAAATTTTCTAAGAGTAAGGGCATTGGAGTTTTTGGTAACGATGCAAAAGATACAAATATTTCTGCAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTCACATGGGCTGATTTACAAGCAAAACTCAATGGCGAGTTGTTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCCAAACCTTTAGGGCAGGGCTATGGTTCCATAATTCCCGATGCTCCTGACGCGGACTCTCATGGATTAACATTGGGTTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATGTGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTAAAAGCTGCAATGGCTATTTCAAGCGAGGGAAATACATATTTGCAAACATCCCAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCGTGCAATATTGTTATGAGAACTTCAACTGGACTTGTGCATCTTCTGGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCACATGAGGTGTTTAGGCAGCTGGATTTACCTCTGGAACGGCGTATTTCGCTTTGTGAAGAGAAAGGAGACATCGAGAGAGCAAAGCAACCGTGGAAGACTCTACCTTCTGGTCATAAGATTGGCACACCACACCCATTATTCAAAGAATTGAAAGACGAAGAAGTAGAACAATACAGAGACAAGTTTACCGGAAGTCAGGCTCAACGCATTGTTAAAGCAGAAGCAGAAAAGCTTGCTGCTGCTCACCTAGAAAAAACTAACGTTTCAGGCGGTGAAAAAAAGCAACAGGCAAAATCCTCCACAGGCCGCAAACCGAAAGCTGCTGGTGGTGGTGGTGCGGTGGAAGCAGGAATTACGATAACAAGACTGGATATCCGAGTAGGATTAATTACTAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGGAAGAAATCGATGTGGGAGAAGCGCAGCCTCGAACCGTTGTCAGTGGACTGGTCAACTACATACCTCTTCAAGAGATGCAGAACCGGAAGGTCTGTGTTCTTTGCAACTTGAAGCCGGCGTCCATGAGGGGAATTAAATCGCAAGCCATGGTTCTGGCTGCTTCCAATAGCGACCACACCAAGGTTGAATTAGTCGAGCCACCCAAAGACGCCAATGTCGGAGAAAGAATAAAATTCCCAGGATTCGAAGGCAAGCCCGACGACGTACTAAACCCGAAGAAAAAGGTATGGGAGACGCTGCAAGTGGATTTGGCTATCAACACAGATGGGGTGGCATGTTTTAAAGATATACCATTTAACACGTCGGCTGGCATTTGCAAAGTTTCTTCCATTTCCGGTGGCTCTATCTGGTAG 2436 43.88 MADVLGDAGGGGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHKIHKEVYDWFGISFDEFGRTSSSQQTEVCQEIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTSPRIRDTNHMFLELPLLRDKLEEYINKMSVAGSWSQNAIQATQAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNISAEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDAPDADSHGLTLGLAEKVGKYVDQYVESMEKVKLKQGLKAAMAISSEGNTYLQTSQFWNLYKADKPSCNIVMRTSTGLVHLLACLLEPFMPSFSHEVFRQLDLPLERRISLCEEKGDIERAKQPWKTLPSGHKIGTPHPLFKELKDEEVEQYRDKFTGSQAQRIVKAEAEKLAAAHLEKTNVSGGEKKQQAKSSTGRKPKAAGGGGAVEAGITITRLDIRVGLITKAQKHPDADSLYVEEIDVGEAQPRTVVSGLVNYIPLQEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGKPDDVLNPKKKVWETLQVDLAINTDGVACFKDIPFNTSAGICKVSSISGGSIW 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 437064 445770 - Cp4.1LG12g00750.1 Cpe12g00074 478071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00074 811 PANTHER METHIONINE--TRNA LIGASE 13 810 IPR023458 GO:0004825
Cpe12g00074 811 SUPERFAMILY Nucleic acid-binding proteins 651 807 IPR012340 -
Cpe12g00074 811 TIGRFAM metG: methionine--tRNA ligase 26 562 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Cpe12g00074 811 ProSiteProfiles tRNA-binding domain profile. 649 752 IPR002547 GO:0000049
Cpe12g00074 811 CDD MetRS_core 25 395 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 PRINTS Methionyl-tRNA synthetase signature 407 418 IPR033911 GO:0004825|GO:0006431
Cpe12g00074 811 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 592 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe12g00074 811 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cpe12g00074 811 CDD tRNA_bind_EMAP-II_like 648 751 - -
Cpe12g00074 811 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825
Cpe12g00074 811 CDD Anticodon_Ia_Met 404 537 IPR041872 -
Cpe12g00074 811 Pfam Anticodon binding domain of methionyl tRNA ligase 450 596 IPR041872 -
Cpe12g00074 811 Pfam Putative tRNA binding domain 655 749 IPR002547 GO:0000049
Cpe12g00074 811 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 13 810 - -
Cpe12g00074 811 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe12g00074 811 Gene3D - 409 579 - -
Cpe12g00074 811 Gene3D - 161 197 IPR029038 -
Cpe12g00074 811 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe12g00074 811 Gene3D - 649 811 IPR012340 -
Cpe12g00074 811 SUPERFAMILY Nucleotidylyl transferase 23 405 - -
Cpe12g00074 811 Gene3D HUPs 25 408 IPR014729 -
Cpe12g00074 811 MobiDBLite consensus disorder prediction 612 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00074 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1463.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02284 Cpe-Chr1:19337235 Cpe12g00074 Cpe-Chr12:437064 8.00E-47 dispersed
Cpe12g00074 Cpe-Chr12:437064 Cpe19g00007 Cpe-Chr19:75128 4.56E-40 dispersed
Cpe01g00083 Cpe-Chr1:496054 Cpe12g00074 Cpe-Chr12:437064 6.93E-47 transposed
Cpe12g00074 Cpe-Chr12:437064 Cpe17g00268 Cpe-Chr17:1765566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00074 Cpe_Chr12 FPKM 2.65841 2.754234 1.596975 1.407101 3.121562 2.672533 2.791299 1.806767 1.733258 1.428298