Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00084 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATTCCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAAAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATAATTTCTGGCAACCATCTTTCAGATTCCTCTCCGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACAGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTCGATAACGCATGGTTTCTTCTCCCTACAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACAGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATCTGAGATAAGACGAAGGGATCCCGGTCATCCAAAGCCGAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCGGGGAAGGACAGGGAGATAAGCAGAATGATCGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACCAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGGTATTGTGGAGGATGTTAACGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTACGCCGGGGAATCAGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1467 46.76 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISGNHLSDSSPCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVDNAWFLLPTVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQHRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNQETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIGIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 507908 515672 + Cp4.1LG12g00860.1 Cpe12g00084 478081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00084 488 SUPERFAMILY ARID-like 32 136 IPR036431 GO:0003677
Cpe12g00084 488 MobiDBLite consensus disorder prediction 143 178 - -
Cpe12g00084 488 SMART bright_3 36 127 IPR001606 GO:0003677
Cpe12g00084 488 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cpe12g00084 488 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cpe12g00084 488 SMART hmgende2 275 344 IPR009071 -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 245 283 - -
Cpe12g00084 488 Pfam HMG (high mobility group) box 276 343 IPR009071 -
Cpe12g00084 488 Gene3D - 29 129 IPR036431 GO:0003677
Cpe12g00084 488 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 416 - -
Cpe12g00084 488 SUPERFAMILY HMG-box 269 348 IPR036910 -
Cpe12g00084 488 CDD HMGB-UBF_HMG-box 276 340 - -
Cpe12g00084 488 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 416 - -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 376 488 - -
Cpe12g00084 488 Gene3D High mobility group box domain 260 355 IPR036910 -
Cpe12g00084 488 Coils Coil 325 345 - -
Cpe12g00084 488 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cpe12g00084 488 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 276 343 IPR009071 -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 405 420 - -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 435 488 - -
Cpe12g00084 488 SMART ARID_2 32 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00073 Cpe-Chr4:708226 Cpe12g00084 Cpe-Chr12:507908 6.55E-09 dispersed
Cpe12g00084 Cpe-Chr12:507908 Cpe17g00251 Cpe-Chr17:1660205 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50289 PF01388 ARID 1.50E-17 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00084 - - bhj:120068345 781.556