Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00084 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATTCCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAAAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATAATTTCTGGCAACCATCTTTCAGATTCCTCTCCGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACAGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTCGATAACGCATGGTTTCTTCTCCCTACAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACAGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATCTGAGATAAGACGAAGGGATCCCGGTCATCCAAAGCCGAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCGGGGAAGGACAGGGAGATAAGCAGAATGATCGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACCAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGGTATTGTGGAGGATGTTAACGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTACGCCGGGGAATCAGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1467 46.76 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISGNHLSDSSPCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVDNAWFLLPTVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQHRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNQETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIGIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 507908 515672 + Cp4.1LG12g00860.1 Cpe12g00084 478081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00084 488 SUPERFAMILY ARID-like 32 136 IPR036431 GO:0003677
Cpe12g00084 488 MobiDBLite consensus disorder prediction 143 178 - -
Cpe12g00084 488 SMART bright_3 36 127 IPR001606 GO:0003677
Cpe12g00084 488 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cpe12g00084 488 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cpe12g00084 488 SMART hmgende2 275 344 IPR009071 -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 245 283 - -
Cpe12g00084 488 Pfam HMG (high mobility group) box 276 343 IPR009071 -
Cpe12g00084 488 Gene3D - 29 129 IPR036431 GO:0003677
Cpe12g00084 488 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 416 - -
Cpe12g00084 488 SUPERFAMILY HMG-box 269 348 IPR036910 -
Cpe12g00084 488 CDD HMGB-UBF_HMG-box 276 340 - -
Cpe12g00084 488 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 416 - -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 376 488 - -
Cpe12g00084 488 Gene3D High mobility group box domain 260 355 IPR036910 -
Cpe12g00084 488 Coils Coil 325 345 - -
Cpe12g00084 488 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cpe12g00084 488 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 276 343 IPR009071 -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 405 420 - -
Cpe12g00084 488 MobiDBLite consensus disorder prediction 435 488 - -
Cpe12g00084 488 SMART ARID_2 32 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00084 - - - bhj:120068345 781.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00073 Cpe-Chr4:708226 Cpe12g00084 Cpe-Chr12:507908 6.55E-09 dispersed
Cpe12g00084 Cpe-Chr12:507908 Cpe17g00251 Cpe-Chr17:1660205 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50289 PF01388 ARID 1.50E-17 CL0123 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00084 Cpe_Chr12 FPKM 4.091735 5.992655 33.585648 35.436333 41.52317 40.060234 45.340908 19.667313 20.129656 20.172895