Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00088 ATGGGTCGCTTCCCATTTGCCATTCTTTTGCTCTCTTCATTTTTTGTTTTGAGGTTTTGTTCCGTTCATGGAAGAATTCCGACCACCGTAGAAGGGCCGTTTAAGCCTGTAACTGTTCCGCTTGATAAGAGTTTCCGGGGGAAGGCCCAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAGAATGGGGGCCAATTTGTGCCGGAGCAGATTTCTGTTTCTCTCTCTGCGGATTATGACTCTGTTTGGATTTCTTGGATCACAGATCCTGAGAAAGTTGCGAGTATTGTCACGTATGGGAAGTTCCTCATGCCAATGAAAAACCAAGCAAAGGGTTATTCTCTTATCTACAATCAACTTTATCCCTTTGAAGGCCTCAAGAACTACACATCTGGAATTATACACCATGTTCGTCTAACGGGATTGGAGCCTGATACTTTGTACCAATATCAATGTGGAGACCCTTCAGCTGCAGAAGAAATAAGCGATATCCATTACTTCAGGACCATGCCTGTTTCTGGGCCTAAGAGTTATCCTAATAGAATAGCATTGGTTGGTGATCTGGGTCTTACATACAACACTACATCAACAGTTGATCATATTTTGAAGAACCATCCCGATCTTGTGCTATTGATTGGGGATGTGAGTTATGCAAACCTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCGTTTCCTCATACTCCTATTCACGAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTATATGGAGCCTCTAATATCTGAAGTTCCATTAATGGTGGTGGAAGGGAACCACGAGATCGAACCACAAGCTGAAAATCGAACATTTGCAGCTTATAGTTCTCGATTTGCATTCCCATCCAACGAGAGTAACTCGTCTTCGACATTTTACTACTCTTTCAATGCAGGTGGCATTCATTTTATAATGCTTGGTGCCTACATTTCATATGACAGATCAGGTGACCAATACAAATGGCTAGAACAAGACCTGGCTAAAGTTAACAGGAAAGTTACTCCATGGTTGGTAGCTACATGGCACCCACCATGGTACAGCACCTACACTGCTCATTATAGAGAAGCAGAGTGCATGAGAGTGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACTTAGTTTTCAACGGCCATGTTCATGCCTATGAGAGGTCAAATAGAGTATATAACTATACTTTGGATCCTTGCGGTCCGGTCTACATAACGGTAGGTGATGGAGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCCGGAAACTGTCCAGACCCGTCCTCGACACCGGATGAATACATGGGCGGTTTCTGTGCGTTCAATTTTACATCAGGCCCAGCTAAAGGAAAATTCTGCTGGGATCAGCAACCTGATTATAGCGCTTATCGTGAAAGTAGCTTCGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCGTTGTGGACATGGCAACGAAACCAGGACTCGTATAGATCTGTCGGGGATATAATATACATCGTACGACAACCAGACGTTTGTCTCAATGAGATGAAGCCCTCCTCCTATAGTGTTAGTGAAGCGAGTGAGATGGCAATCGAAAACAAGAGTTTCGGGATCCTAAAACTCGAAGACGCTTTCGAGTTGGTTGGAGTTGAAGTTGATGCCGGGTTGTATACTGGATCTAGACCATTCATGTCACCGGTATTGCCATTGTTGAAGCTCGGTGTGGTGGTCGTAGCTGGTACCGTTATTGTCGGGGTTGGGCTTGTGTTAGCCGGAGGGCTCGGCGTGATTGCTCCTCCTGCAGCACTGGATAATCATCGCAAATAA 1845 44.66 MGRFPFAILLLSSFFVLRFCSVHGRIPTTVEGPFKPVTVPLDKSFRGKAQDLPETDPRVQKNGGQFVPEQISVSLSADYDSVWISWITDPEKVASIVTYGKFLMPMKNQAKGYSLIYNQLYPFEGLKNYTSGIIHHVRLTGLEPDTLYQYQCGDPSAAEEISDIHYFRTMPVSGPKSYPNRIALVGDLGLTYNTTSTVDHILKNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPHTPIHETYQPRWDYWGRYMEPLISEVPLMVVEGNHEIEPQAENRTFAAYSSRFAFPSNESNSSSTFYYSFNAGGIHFIMLGAYISYDRSGDQYKWLEQDLAKVNRKVTPWLVATWHPPWYSTYTAHYREAECMRVAMEDLLYKYKVDLVFNGHVHAYERSNRVYNYTLDPCGPVYITVGDGGNREKMAIEHADEPGNCPDPSSTPDEYMGGFCAFNFTSGPAKGKFCWDQQPDYSAYRESSFGHGILEVKNETHALWTWQRNQDSYRSVGDIIYIVRQPDVCLNEMKPSSYSVSEASEMAIENKSFGILKLEDAFELVGVEVDAGLYTGSRPFMSPVLPLLKLGVVVVAGTVIVGVGLVLAGGLGVIAPPAALDNHRK 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 527227 532354 - Cp4.1LG12g00950.1 Cpe12g00088 478085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00088 614 PANTHER PURPLE ACID PHOSPHATASE 15 15 523 - -
Cpe12g00088 614 CDD MPP_PAPs 176 513 IPR041792 -
Cpe12g00088 614 Gene3D - 176 522 IPR029052 -
Cpe12g00088 614 PANTHER ACID PHOSPHATASE RELATED 15 523 IPR039331 GO:0003993
Cpe12g00088 614 SUPERFAMILY Metallo-dependent phosphatases 181 502 IPR029052 -
Cpe12g00088 614 Pfam Calcineurin-like phosphoesterase 181 393 IPR004843 GO:0016787
Cpe12g00088 614 Pfam Iron/zinc purple acid phosphatase-like protein C 408 501 IPR025733 -
Cpe12g00088 614 Pfam Purple acid Phosphatase, N-terminal domain 68 169 IPR015914 GO:0003993|GO:0046872
Cpe12g00088 614 CDD FN3 68 161 IPR003961 GO:0005515
Cpe12g00088 614 SUPERFAMILY Purple acid phosphatase, N-terminal domain 49 171 IPR008963 GO:0003993|GO:0046872
Cpe12g00088 614 Gene3D - 67 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00088 K22390 ACP7; acid phosphatase type 7 - csv:101214711 1009.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01571 Cpe-Chr3:12160875 Cpe12g00088 Cpe-Chr12:527227 0 dispersed
Cpe12g00088 Cpe-Chr12:527227 Cpe19g00466 Cpe-Chr19:4110781 3.72E-77 dispersed
Cpe18g00903 Cpe-Chr18:8097094 Cpe12g00088 Cpe-Chr12:527227 3.32E-23 dispersed
Cpe12g00088 Cpe-Chr12:527227 Cpe10g00278 Cpe-Chr10:1646697 2.68E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00088 Cpe_Chr12 FPKM 33.08522 38.258976 35.639652 37.167973 28.674902 31.26638 28.210155 22.934172 23.911171 23.515198