Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00092 AACATTCGATATCAAGAGAAAAAGCTGAACCGTCTCTGTTTTCTTCTACCGGCGGACTTCGATGAAGTCCAGCCACTTGATCGTGAAGAGCTTCATGAACTCAACGACAGTCACAGCCACAACAAACAACAAAGCAAACATGATCATAATCGAGATAGTTGGTCTCAATTTCAAGCCTTACTCCGAGATTCCCTTCACAAAATCCATAACCTGAAATGGGTTAATTCTTGTTGCTACGGCGGCAGACCCAGAAAGCCACCGCCGGCCGAGTTTCACGACACCGATGGGGTACACCTTTCTGAGAGACTCGGCGGCGACAACCCAAGAATCTTCAGCTTTGCAGAGCTCTATATTGGAACCAAAGGATTCAGTGCAGAGGAAATTCTTGGTAGTGGTGGATTTGGGAAGGTTTACAGAGCATATTTGCCTAGTGATGGAACTATGGCAGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCAGAGCTGGTGGCGGTTGCCCATCTCCGGCACCGGAATCTTGTCCGTCTCCGTGGTTGGTGTGTTCATGAAGACCAATTGTTCATTTTCCGGCTGGTGGAAACCACCAAAATTGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTTCAAAGAAGAAGCATTGCCACTGCAAAATCTGATGTTTTCAGCTTTGGTATTGTTCTTCTTGAGGTAGTCTCTGGTCGGCGAGCAGTGGACCTTACATGTCCTGATGATCAGATTGTGTTGCTTGATTGGTTTCGAAAGCTCTCCGACGACGGAATGCCGCTGCTCGGCGGCGATAACCGGCTGCCAGATGGGTCTTATAATCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTCCTCTGTACACTCCAAAGCCCTCTGTATAGACCAAATATGAAATGGGTTGTGGAAGCCCTTTCCGGTGCCACCAATAACTTCTCCGACTCGCAGCGAGTGGCGGAGCTGGACTTCGGAACCGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGCCTTGGAATGAAGACTTGCCCTGCATTACGGGAACGATTCTCGAATGAACTCGAAAACTTGGGACGTCTTCGCCATAGAAACTTGATACAGCTCCGTGGATGGTGCACAGAGCAAGGGGAGATGCTTGTGGTATATGATTATTCAGCAGACCGTCTCTTGAGCCACCTGCTTTTCCACCATGACAATAGAGCTTTACAATGGTGTCATAGATACAACATCATCAAATCTCTGGCTTCAGCAATTCTTTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAAGAACATCACCTCATCAGCTGTCATTCTTGATATTGATCTTAACCCAAAGCTGAGTTCTTTCGCCCTTGCAGAATTCCTGACAAGAAATGAGCATGGAAATCATCATGTAACCATAGATAAAAGCAAATCGGTTCGCGGGATTTTCGGGTACATGTCCCCCGAGTATTTAGACTCAGGAGATGCAGCAGCGACAGCTGATGTATACAGCTTTGGTGTAGTCGTTCTAGAGGTGATTACTGGTCAGATGGCCGTCGATTTTCGACGGCCAGAGGTGTTGCTGGTGAGGAAAGTCCATGAATTCCACACCCGGAAAAGATCACTGGAAGAACTTGCTGATATAAGGCTGAATGGAGAATACAACCACAAAGAACTGATGAGAATGTTGAGATTAGGAGTGGCATGTACTCACTCAAACCCAGATTTAAGACCAAAAATGAGGCAGATAGTTAAAATACTCGATGGCAATGATCAATGCTTCCCTAAAGAAGAAAAAATGGAGAGCCTAGAAGGTTGGAAGCAAAGAAATGCAACTTCTTTGTCATTGGTTAGGAGGATCCAAGCTCTGGGAATACAGTGA 1914 46.55 NIRYQEKKLNRLCFLLPADFDEVQPLDREELHELNDSHSHNKQQSKHDHNRDSWSQFQALLRDSLHKIHNLKWVNSCCYGGRPRKPPPAEFHDTDGVHLSERLGGDNPRIFSFAELYIGTKGFSAEEILGSGGFGKVYRAYLPSDGTMAAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHEDQLFIFRLVETTKIGGTIGYLPPESFQRRSIATAKSDVFSFGIVLLEVVSGRRAVDLTCPDDQIVLLDWFRKLSDDGMPLLGGDNRLPDGSYNLIEMERLIHLGLLCTLQSPLYRPNMKWVVEALSGATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELENLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHDNRALQWCHRYNIIKSLASAILYLHEEWDEQVIHKNITSSAVILDIDLNPKLSSFALAEFLTRNEHGNHHVTIDKSKSVRGIFGYMSPEYLDSGDAAATADVYSFGVVVLEVITGQMAVDFRRPEVLLVRKVHEFHTRKRSLEELADIRLNGEYNHKELMRMLRLGVACTHSNPDLRPKMRQIVKILDGNDQCFPKEEKMESLEGWKQRNATSLSLVRRIQALGIQ 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 548387 551623 + Cp4.1LG12g00870.1 Cpe12g00092 478089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00092 637 PANTHER - 11 195 - -
Cpe12g00092 637 PANTHER - 318 636 - -
Cpe12g00092 637 ProSiteProfiles Protein kinase domain profile. 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00092 637 Pfam Protein tyrosine and serine/threonine kinase 328 598 IPR001245 GO:0004672|GO:0006468
Cpe12g00092 637 Pfam Protein tyrosine and serine/threonine kinase 206 243 IPR001245 GO:0004672|GO:0006468
Cpe12g00092 637 Gene3D Phosphorylase Kinase; domain 1 333 399 - -
Cpe12g00092 637 SUPERFAMILY Protein kinase-like (PK-like) 108 321 IPR011009 -
Cpe12g00092 637 Pfam Protein kinase domain 124 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00092 637 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 11 195 - -
Cpe12g00092 637 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 196 318 - -
Cpe12g00092 637 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 318 636 - -
Cpe12g00092 637 PANTHER - 196 318 - -
Cpe12g00092 637 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Cpe12g00092 637 Gene3D Transferase(Phosphotransferase) domain 1 193 332 - -
Cpe12g00092 637 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Cpe12g00092 637 SUPERFAMILY Protein kinase-like (PK-like) 318 598 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00092 - - - mcha:111009548 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00092 Cpe17g00250 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00092 Cpe-Chr12:548387 Cpe03g00101 Cpe-Chr3:521855 1.99E-14 dispersed
Cpe12g00092 Cpe-Chr12:548387 Cpe17g00250 Cpe-Chr17:1652524 1.47E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62738 PF07714 PK_Tyr_Ser-Thr 7.20E-29 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00092 Cpe_Chr12 FPKM 12.829211 15.252578 10.454745 10.031651 7.82585 7.819149 7.618171 6.603772 7.557739 6.833016