Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00099 ATGACAACCATAGACAAGATCTTAAAGGATCAAAGAGCGGAAGGAGCTGCAACTGTAATGGCTATAGGAACCGCAGTTCCGTCGAACTGGGTTCAACAAACTACTTATCCTGATTACTATTTTCGTATAACCAACAACGAGCATAAAACTGAGCTCAAACACAAATTCAAGCGCATTTGTGAAAAGTCGACAATCCGGAAGCGACACATGCTGTTAACAGAAGAGCTTCTAAAACAAAACCCAAAAATCTGTGCACACGAAGCACCGTCTCTGGACTCCCGACAAGACATTGCGGTGGTCGAAGTTCCAAAGCTCGGAAAACAAGCCGCCGTCAACGCCATCAGGGAATGGGGCCGCCCCACCGCCGACATCACCCACTTGATCTTCTGCACCAGCAGCGGCATCGACATGCCCGGCGCCGACTACCGTCTCACCAAGCTCCTCGGTCTCCGCCCCTCCGTCAAGCGCTTCATGATCTACCAACAGGGCTGCTTCGCCGGCGCCACCGTCCTCCGCCTCGTCAAAGACCTCGCCGAAAACAATCGCGCCGCCCGTGTCCTCGCCGTCTGCTCCGAGATCACCGCCGTTACCTTCCGTGGGCCGAGCGATTCCCACCTCGACGGTCTCGTGGGCCAAGCCCTGTTCGGCGATGGAGCCGCTGCGATCATTGTGGGCTCGGATCCAGTACCTGGGCTTGAGAGGCCCATATTCGAAATAATCTCTGCGGCCCAAACTATTTTGCCCGATAGCGATGGGGCCATTGATGGGCATTTACGCGAAGTTGGGCTTACATTTCACCTTCTCAAGGATGTTCCTGGGCTTGTGTCCAAAAACATTCGGAGGATTCTTCTTGAGGCCTTTGGGCCTTTGGGCCTTTCTAATTGGAACTCGATTTTCTGGATTGTGCATCCTGGTGGGCCGGCCATTTTGGACCAGATTGAGATGGAGTTGGGCCTTGGGCCCGATAAGTTGCGTTCGTCGAGGCACGTGCTTAGGGAGTACGGAAACATGTCGAGCGCGTGCGTGTTTTTTATTTTGGATGAGATGAGGAAAAAGTCGAGCCAAAATGGGCTCAAGACCACTGGCGAGGGACTTGAATGGGGCGTGTTGTTTGGGTTTGGGCCTGGGCTTACTGTTGAAACTGTAGCCCTTCGTAGTGTGGCTATTTAG 1170 53.42 MTTIDKILKDQRAEGAATVMAIGTAVPSNWVQQTTYPDYYFRITNNEHKTELKHKFKRICEKSTIRKRHMLLTEELLKQNPKICAHEAPSLDSRQDIAVVEVPKLGKQAAVNAIREWGRPTADITHLIFCTSSGIDMPGADYRLTKLLGLRPSVKRFMIYQQGCFAGATVLRLVKDLAENNRAARVLAVCSEITAVTFRGPSDSHLDGLVGQALFGDGAAAIIVGSDPVPGLERPIFEIISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLVSKNIRRILLEAFGPLGLSNWNSIFWIVHPGGPAILDQIEMELGLGPDKLRSSRHVLREYGNMSSACVFFILDEMRKKSSQNGLKTTGEGLEWGVLFGFGPGLTVETVALRSVAI 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 598873 600582 - Cp4.1LG12g01070.1 Cpe12g00099 478096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00099 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Cpe12g00099 389 Gene3D - 236 389 IPR016039 GO:0016746
Cpe12g00099 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 3 388 IPR011141 GO:0009058|GO:0016747
Cpe12g00099 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Cpe12g00099 389 Pfam Chalcone and stilbene synthases, N-terminal domain 7 228 IPR001099 -
Cpe12g00099 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Cpe12g00099 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Cpe12g00099 389 Gene3D - 1 235 IPR016039 GO:0016746
Cpe12g00099 389 CDD CHS_like 16 384 - -
Cpe12g00099 389 PIRSF PKS_III 3 389 IPR011141 GO:0009058|GO:0016747
Cpe12g00099 389 PANTHER CHALCONE SYNTHASE 2 3 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00099 K00660 CHS; chalcone synthase [EC:2.3.1.74] - pvy:116105827 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00666 Cpe-Chr3:3985885 Cpe12g00099 Cpe-Chr12:598873 1.28E-06 dispersed
Cpe03g00667 Cpe-Chr3:3988502 Cpe12g00099 Cpe-Chr12:598873 0 dispersed
Cpe12g00099 Cpe-Chr12:598873 Cpe15g00577 Cpe-Chr15:6601486 1.64E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g884 Blo01g00322 . . Bda08g00027 . . Bma04g01045 Bma05g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01133 . . . . . . . Cma17g00113 . . Cpe12g00099 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00099 Cpe_Chr12 FPKM 23.109589 21.13464 80.622902 81.656281 43.05127 37.226025 42.150517 42.557537 46.997459 45.425804