Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00102 ATGGCGGCACTTAGTAAGTGGTCTTCTCTGTCTCTGTTTGCCCTTGCAATGGTGTTCTTCGTAACAATCGCTGTGATTCGCAAGGGAGAGACGTCTGAAGTTAGGGTGCAGAATGATGATATGGAGGAAGAACTCAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCTTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCAAATTGGCACCGAAACCGTAAACGTCTAGCTGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTATGTCGTTACTGATTCGAGTGACCATGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTGATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGAGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTCAAAACCATTGATGCTCGAGGAGTCAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAACGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCCAGCCATATATGGATTGACCACAATTCGCTCTCTAATTGTGCTGATGGACTTATTGATGCCATTATGGGCTCAACCGCTATCACAATCTCCAACAACCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCAAGGGGCTCATTCAAAGAATGCCAAGGTGTAGGCATGGCTATTTCCATGTGGTGACTAAGCGAGTCGAAACGCCGGAGAGCAAATGGAAAGGCTGGAATTGGAGATCAGAAGGAGATATGTTACTAAACGGTGCATATTTCACCCCATCCGGCGCCGGAGCTTCAGCAAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAATCTGCTTCCATGGTAGGCTCCATCACTTCTTCTGCAGGTTCTCTCCCTTGCCGCCGAGGCCATCCCTGCTAG 1182 47.21 MAALSKWSSLSLFALAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVTKRVETPESKWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 619595 623825 + Cp4.1LG12g00970.1 Cpe12g00102 478099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00102 393 PANTHER PECTATE LYASE 18-RELATED 321 390 IPR045032 GO:0030570
Cpe12g00102 393 PANTHER PECTATE LYASE 37 321 - -
Cpe12g00102 393 SUPERFAMILY Pectin lyase-like 59 387 IPR011050 -
Cpe12g00102 393 SMART amb_all 157 356 IPR002022 -
Cpe12g00102 393 Pfam Pectate lyase 169 323 IPR002022 -
Cpe12g00102 393 PANTHER PECTATE LYASE 18-RELATED 37 321 IPR045032 GO:0030570
Cpe12g00102 393 PANTHER PECTATE LYASE 321 390 - -
Cpe12g00102 393 Gene3D - 82 386 IPR012334 -
Cpe12g00102 393 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cpe12g00102 393 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cpe12g00102 393 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cpe12g00102 393 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cpe12g00102 393 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00382 Cpe12g00102 CCT
Cpe08g00382 Cpe12g00102 ECH
Cpe12g00102 Cpe17g00243 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00102 Cpe-Chr12:619595 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe15g00122 Cpe-Chr15:968547 0 wgd
Cpe12g00102 Cpe-Chr12:619595 Cpe17g00243 Cpe-Chr17:1588320 0 wgd
Cpe12g00102 Cpe-Chr12:619595 Cpe03g01570 Cpe-Chr3:12149997 1.12E-153 wgd
Cpe12g00102 Cpe-Chr12:619595 Cpe05g00107 Cpe-Chr5:547453 0 wgd
Cpe12g00102 Cpe-Chr12:619595 Cpe08g00382 Cpe-Chr8:2377087 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00102 K01728 - csv:101217580 745.347