Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00136 ATGGAAGCTACTAGGCGTTGGTTTAATAAGTTCAGATCCAAAGACAAGCCAAAATCCTCAACAAATAAGGAGAGTGCAGGAAATGCTAGAGATGCATCGAAAGCACCAACCAGTGAAGAGTTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAGAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACGGAGTATATGCGCCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTAACAATGATAGGGAGGGGTGCTTTCGGAGAGGTTAGAGTTTGTCGTGAGAAAGCAACAGGTCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTGTATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTTATGAGGAAAGATACTCTAACAGAAGACGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCAGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTACAAGAAAAGGATTTTTCCCAGGGAAATAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGACCTGTGGCATCAAAACGCACACAACAGGAACAACTACAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTAGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAATGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGACGAATTGGATACTCAAAACTTTGAGAAGTTCGAAGAGACTGAAAATGCAATTCAGACGTCATCAAAATCGGGTCCATGGAGAAAGATGTTATCATCGAAGGACGTCAATTTTGTGGGTTATACGTACAAAAACTTGGAAATCATTGATGATAATCAATTGCCTGGAATAGCTGAATTGAAGAAGAAGAGCGCAAAATCTACAAGACCTTCCATCAAATCTCTTTTCGCTAACGAATCTGCCATGGCGACAAATCAACCCGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTCCCCGAGAAACCGATCAGCGCCGGTGAGAAGCATTCATGA 1659 41.23 MEATRRWFNKFRSKDKPKSSTNKESAGNARDASKAPTSEELPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDVNFVGYTYKNLEIIDDNQLPGIAELKKKSAKSTRPSIKSLFANESAMATNQPVQGSFLKLLPPQLEVPEKPISAGEKHS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 864627 872807 - Cp4.1LG12g01340.1 Cpe12g00136 478133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00136 552 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 40 521 - -
Cpe12g00136 552 MobiDBLite consensus disorder prediction 1 47 - -
Cpe12g00136 552 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Cpe12g00136 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cpe12g00136 552 MobiDBLite consensus disorder prediction 22 47 - -
Cpe12g00136 552 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cpe12g00136 552 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe12g00136 552 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00136 552 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00136 552 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Cpe12g00136 552 MobiDBLite consensus disorder prediction 1 21 - -
Cpe12g00136 552 Coils Coil 68 102 - -
Cpe12g00136 552 CDD STKc_NDR_like 117 482 - -
Cpe12g00136 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 521 - -
Cpe12g00136 552 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe12g00136 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe12g00136 552 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00136 552 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00136 Cpe17g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00486 Cpe-Chr7:3166307 Cpe12g00136 Cpe-Chr12:864627 1.43E-95 dispersed
Cpe12g00136 Cpe-Chr12:864627 Cpe17g00907 Cpe-Chr17:7020142 0 dispersed
Cpe18g00410 Cpe-Chr18:5284713 Cpe12g00136 Cpe-Chr12:864627 4.46E-34 dispersed
Cpe10g00039 Cpe-Chr10:261697 Cpe12g00136 Cpe-Chr12:864627 0 transposed
Cpe12g00136 Cpe-Chr12:864627 Cpe17g00198 Cpe-Chr17:1277546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62741 PF00069 Pkinase 1.00E-65 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00136 K08790 - csv:101205120 1080.47