Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00144 | ATGAATTCTTCGTTCTTTCACTCCCAAAACGCCGATTTCTCGCCGGAATCTTCCTTCGGCTCCTTCGAATCGCTGCAATGGGAAGGCTTCCAAATCAACGACGACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGGGTACCCACCGGAGATTTCCCTCCGGCAGGCTCCGATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGAACCCCACAAGCGAAAATCCTACAGAGGAGTCCGCCGGCGGCCATGGGGAAAATTCGCGGCGGAAATACGGGACTCGACCCGAAATGGGGCTCGGGTTTGGCTCGGAACATTCGACAGCGCCGAGGCGGCTGCTTTAGCCTATGATCAAGCTGCTTTTTCAATGAGGGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATAAACTCCAGTGAAAACGGCGGCGACGGTGGATCTCCGGTGGTGGCGCTGAAGAGAAAACACTCGATGAGGAAGAAATTCACAAGGAGAAAGAGCAAAGAAAGAGATGGGAGTGGAAAGATTGTGAATAATGTGGTTGTTTTGGAAGATCTTGGGCCTGATTATTTGGAAGAACTTCTAGAGTCGTCGGAGAATCTCCGGCCATAG | 684 | 52.19 | MNSSFFHSQNADFSPESSFGSFESLQWEGFQINDDSLPFNENDSGEMLLHSLISEAAGYPPEISLRQAPIKDEEVDSLGEEEPHKRKSYRGVRRRPWGKFAAEIRDSTRNGARVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSSENGGDGGSPVVALKRKHSMRKKFTRRKSKERDGSGKIVNNVVVLEDLGPDYLEELLESSENLRP | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 921633 | 922316 | - | Cp4.1LG12g01490.1 | Cpe12g00144 | 478141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00144 | 227 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | PANTHER | DNA-BINDING DOMAIN | 32 | 221 | IPR044808 | GO:0003700|GO:0009873 | |
Cpe12g00144 | 227 | MobiDBLite | consensus disorder prediction | 161 | 196 | - | - | |
Cpe12g00144 | 227 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe12g00144 | 227 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe12g00144 | 227 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 32 | 221 | - | - | |
Cpe12g00144 | 227 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677 | |
Cpe12g00144 | 227 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01514 | Cpe-Chr3:11864606 | Cpe12g00144 | Cpe-Chr12:921633 | 6.04E-77 | dispersed | |
Cpe08g00330 | Cpe-Chr8:2066456 | Cpe12g00144 | Cpe-Chr12:921633 | 2.56E-07 | dispersed | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe13g00252 | Cpe-Chr13:1966910 | 1.15E-33 | dispersed | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe15g00076 | Cpe-Chr15:552562 | 7.08E-44 | wgd | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe17g00191 | Cpe-Chr17:1218984 | 5.09E-21 | wgd | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe03g01512 | Cpe-Chr3:11858223 | 7.74E-21 | wgd | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe05g00060 | Cpe-Chr5:304277 | 7.89E-09 | wgd | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe08g00329 | Cpe-Chr8:2060730 | 4.34E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50294 | PF00847 | AP2 | 1.50E-15 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00144 | K14516 | - | csv:101206564 | 361.303 |