Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00144 ATGAATTCTTCGTTCTTTCACTCCCAAAACGCCGATTTCTCGCCGGAATCTTCCTTCGGCTCCTTCGAATCGCTGCAATGGGAAGGCTTCCAAATCAACGACGACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGGGTACCCACCGGAGATTTCCCTCCGGCAGGCTCCGATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGAACCCCACAAGCGAAAATCCTACAGAGGAGTCCGCCGGCGGCCATGGGGAAAATTCGCGGCGGAAATACGGGACTCGACCCGAAATGGGGCTCGGGTTTGGCTCGGAACATTCGACAGCGCCGAGGCGGCTGCTTTAGCCTATGATCAAGCTGCTTTTTCAATGAGGGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATAAACTCCAGTGAAAACGGCGGCGACGGTGGATCTCCGGTGGTGGCGCTGAAGAGAAAACACTCGATGAGGAAGAAATTCACAAGGAGAAAGAGCAAAGAAAGAGATGGGAGTGGAAAGATTGTGAATAATGTGGTTGTTTTGGAAGATCTTGGGCCTGATTATTTGGAAGAACTTCTAGAGTCGTCGGAGAATCTCCGGCCATAG 684 52.19 MNSSFFHSQNADFSPESSFGSFESLQWEGFQINDDSLPFNENDSGEMLLHSLISEAAGYPPEISLRQAPIKDEEVDSLGEEEPHKRKSYRGVRRRPWGKFAAEIRDSTRNGARVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSSENGGDGGSPVVALKRKHSMRKKFTRRKSKERDGSGKIVNNVVVLEDLGPDYLEELLESSENLRP 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 921633 922316 - Cp4.1LG12g01490.1 Cpe12g00144 478141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00144 227 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Cpe12g00144 227 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Cpe12g00144 227 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Cpe12g00144 227 PANTHER DNA-BINDING DOMAIN 32 221 IPR044808 GO:0003700|GO:0009873
Cpe12g00144 227 MobiDBLite consensus disorder prediction 161 196 - -
Cpe12g00144 227 MobiDBLite consensus disorder prediction 1 20 - -
Cpe12g00144 227 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Cpe12g00144 227 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Cpe12g00144 227 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Cpe12g00144 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 221 - -
Cpe12g00144 227 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Cpe12g00144 227 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01514 Cpe-Chr3:11864606 Cpe12g00144 Cpe-Chr12:921633 6.04E-77 dispersed
Cpe08g00330 Cpe-Chr8:2066456 Cpe12g00144 Cpe-Chr12:921633 2.56E-07 dispersed
Cpe12g00144 Cpe-Chr12:921633 Cpe13g00252 Cpe-Chr13:1966910 1.15E-33 dispersed
Cpe12g00144 Cpe-Chr12:921633 Cpe15g00076 Cpe-Chr15:552562 7.08E-44 wgd
Cpe12g00144 Cpe-Chr12:921633 Cpe17g00191 Cpe-Chr17:1218984 5.09E-21 wgd
Cpe12g00144 Cpe-Chr12:921633 Cpe03g01512 Cpe-Chr3:11858223 7.74E-21 wgd
Cpe12g00144 Cpe-Chr12:921633 Cpe05g00060 Cpe-Chr5:304277 7.89E-09 wgd
Cpe12g00144 Cpe-Chr12:921633 Cpe08g00329 Cpe-Chr8:2060730 4.34E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50294 PF00847 AP2 1.50E-15 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00144 K14516 - csv:101206564 361.303