Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00151 | ATGACGGTGGAAAATCCCTGTTTTTCTGCACCAACTTTTTTTCCCCTCAAATTTTCGGTTTTTCTCAATCTGGCTAATTCCAATCCGTGGTGGGCTAGTCGGGTGGGCTTTCCGGCCACCGACCCGGTTTCTACCACCGTCGGCGGCTGCGGAACAGAGCACGACAACGATGAAGACGAGCTGAAGGAAGGTAGCGTGCTGGTTGGGAACCGCCGAACGAGAGGGCGGCCACCGGGAGCGAAAAACAAACCAAAACCCCCAATCATCGTCACGCGCGACAGTCCTCACGCGCTTCGCACGCACGTGATCGAGATCGCCGGAGGAGCCGACGTGGCGGACAGCATAAACCAATTCTCCAGCCGCCGACAACGTGGGGTTTGTGTTCTCAGCGGAAACGGCACGGTTGCCGACGTGACTCTCCGGCAATCCGCCACCGTGATCCAACTTCACGGCCTGTTCGATATTCTATCACTGAGCGGCTCTTTTCTTCCCGGTCCAGCCATCCCCTGTTCCACTAGACTCACCGTGTACCTCGCCGGTGGTCAAGGGCAGGTGGTCGGAGGGACAGTGGTGGGCCCTTTGTTGGCGGCTGGGCCTGTCATTTTGATAGCTGCTACTTTTGCTAATGCAATTTATGAGAGATTGCCTTTACAAGACGACCATGATTGCCAAGAAACAGAGGTTTCTCCGGCCGCTATAGATGGCGGAGAAGTGGAGGAGCCGCCGCCTCCGCCGCCGTATCCCCGGATGTCAACTTCAATTTACGACTTGATGACACCAAATAATGATCATGAAATGGGAATTGATAAGGTTTGGTTGGGCTCAGCTTAG | 831 | 55.23 | MTVENPCFSAPTFFPLKFSVFLNLANSNPWWASRVGFPATDPVSTTVGGCGTEHDNDEDELKEGSVLVGNRRTRGRPPGAKNKPKPPIIVTRDSPHALRTHVIEIAGGADVADSINQFSSRRQRGVCVLSGNGTVADVTLRQSATVIQLHGLFDILSLSGSFLPGPAIPCSTRLTVYLAGGQGQVVGGTVVGPLLAAGPVILIAATFANAIYERLPLQDDHDCQETEVSPAAIDGGEVEEPPPPPPYPRMSTSIYDLMTPNNDHEMGIDKVWLGSA | 276 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 965802 | 968317 | + | Cp4.1LG12g01470.1 | Cpe12g00151 | 478148 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00151 | 276 | CDD | DUF296 | 99 | 169 | IPR005175 | - | |
| Cpe12g00151 | 276 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 41 | 257 | IPR014476 | GO:0003680 | |
| Cpe12g00151 | 276 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 97 | 219 | - | - | |
| Cpe12g00151 | 276 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 208 | IPR005175 | - | |
| Cpe12g00151 | 276 | Gene3D | - | 98 | 229 | - | - | |
| Cpe12g00151 | 276 | ProSiteProfiles | PPC domain profile profile. | 95 | 229 | IPR005175 | - | |
| Cpe12g00151 | 276 | PANTHER | DNA-BINDING PROTEIN-LIKE | 41 | 257 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe12g00151 | Cpe-Chr12:965802 | Cpe01g01079 | Cpe-Chr1:6366461 | 3.11E-62 | dispersed | |
| Cpe12g00151 | Cpe-Chr12:965802 | Cpe03g01502 | Cpe-Chr3:11828854 | 4.42E-68 | wgd | |
| Cpe12g00151 | Cpe-Chr12:965802 | Cpe08g00320 | Cpe-Chr8:2023409 | 1.39E-67 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00151 | - | - | cpep:111806975 | 503.056 |