Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00161 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTCAAGAAGAAGAAACAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCAACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACAGATGAACAGGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCAAATCAGGGTCGGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCAAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACGAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGCCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTCGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTGTCTATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAATACATGTTTAAATGGGTTGTCATCGTTTCTGGAGTAGCTTGTGCGTTAATGTTCGTCGCAATTATTTACTACGCTCGTCTCAAAGGTTTGGTCGGATCTTGA 1182 45.77 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEQVIPVVEELQRRLPPSNAVQLHVQGDGKANQGRQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACALMFVAIIYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1043975 1048222 - Cp4.1LG12g01630.1 Cpe12g00161 478158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00161 393 Gene3D - 14 99 - -
Cpe12g00161 393 Pfam CorA-like Mg2+ transporter protein 273 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cpe12g00161 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cpe12g00161 393 Gene3D Magnesium transport protein CorA, transmembrane region 103 323 - -
Cpe12g00161 393 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 393 - -
Cpe12g00161 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 393 IPR039204 -
Cpe12g00161 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cpe12g00161 393 Coils Coil 194 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00161 Cpe17g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00485 Cpe-Chr1:2800338 Cpe12g00161 Cpe-Chr12:1043975 2.70E-109 dispersed
Cpe02g01612 Cpe-Chr2:13498264 Cpe12g00161 Cpe-Chr12:1043975 5.09E-118 dispersed
Cpe04g00333 Cpe-Chr4:4076562 Cpe12g00161 Cpe-Chr12:1043975 1.62E-100 dispersed
Cpe07g00089 Cpe-Chr7:430584 Cpe12g00161 Cpe-Chr12:1043975 2.24E-90 dispersed
Cpe12g00161 Cpe-Chr12:1043975 Cpe15g00049 Cpe-Chr15:327493 4.48E-176 dispersed
Cpe20g00717 Cpe-Chr20:6097753 Cpe12g00161 Cpe-Chr12:1043975 2.09E-08 dispersed
Cpe12g00161 Cpe-Chr12:1043975 Cpe17g00172 Cpe-Chr17:1096894 5.84E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00161 K16075 - csv:101203841 686.797