Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00161 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTCAAGAAGAAGAAACAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCAACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACAGATGAACAGGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCAAATCAGGGTCGGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCAAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACGAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGCCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTCGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTGTCTATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAATACATGTTTAAATGGGTTGTCATCGTTTCTGGAGTAGCTTGTGCGTTAATGTTCGTCGCAATTATTTACTACGCTCGTCTCAAAGGTTTGGTCGGATCTTGA 1182 45.77 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEQVIPVVEELQRRLPPSNAVQLHVQGDGKANQGRQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACALMFVAIIYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1043975 1048222 - Cp4.1LG12g01630.1 Cpe12g00161 478158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00161 393 Gene3D - 14 99 - -
Cpe12g00161 393 Pfam CorA-like Mg2+ transporter protein 273 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cpe12g00161 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cpe12g00161 393 Gene3D Magnesium transport protein CorA, transmembrane region 103 323 - -
Cpe12g00161 393 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 393 - -
Cpe12g00161 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 393 IPR039204 -
Cpe12g00161 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cpe12g00161 393 Coils Coil 194 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00161 K16075 MRS2, MFM1; magnesium transporter - csv:101203841 686.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00161 Cpe17g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00485 Cpe-Chr1:2800338 Cpe12g00161 Cpe-Chr12:1043975 2.70E-109 dispersed
Cpe02g01612 Cpe-Chr2:13498264 Cpe12g00161 Cpe-Chr12:1043975 5.09E-118 dispersed
Cpe04g00333 Cpe-Chr4:4076562 Cpe12g00161 Cpe-Chr12:1043975 1.62E-100 dispersed
Cpe07g00089 Cpe-Chr7:430584 Cpe12g00161 Cpe-Chr12:1043975 2.24E-90 dispersed
Cpe12g00161 Cpe-Chr12:1043975 Cpe15g00049 Cpe-Chr15:327493 4.48E-176 dispersed
Cpe20g00717 Cpe-Chr20:6097753 Cpe12g00161 Cpe-Chr12:1043975 2.09E-08 dispersed
Cpe12g00161 Cpe-Chr12:1043975 Cpe17g00172 Cpe-Chr17:1096894 5.84E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G16010 83.3 2.4e-203 705.3
Cpe07g00089 . 8 381 MRS2 Gene Family AT1G16010 53.7 3.8e-111 399.1
Cpe12g00161 CST 1 366 MRS2 Gene Family AT5G64560 79.3 8.6e-157 550.4
Cpe17g00172 CST 1 423 MRS2 Gene Family AT5G64560 62.4 1.3e-133 473.4
Cpe15g00049 . 1 374 MRS2 Gene Family AT5G64560 68.1 9.9e-129 457.2
Cpe04g00333 . 39 498 MRS2 Gene Family AT3G19640 64.4 1.0e-149 527.3
Cpe01g00485 . 1 453 MRS2 Gene Family AT3G58970 63.1 2.3e-145 512.7
Cpe14g00327 . 1 441 MRS2 Gene Family AT3G58970 63.9 5.0e-140 495.0
Cpe07g00089 . 9 381 MRS2 Gene Family AT2G03620 66.6 9.7e-133 470.7
Cpe03g00907 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Cpe02g01612 CST 13 448 MRS2 Gene Family AT2G03620 52.9 2.9e-113 406.0
Cpe14g00327 . 56 440 MRS2 Gene Family AT4G28580 50.4 2.6e-90 329.7
Cpe01g00485 . 61 452 MRS2 Gene Family AT4G28580 50.1 4.4e-90 328.9
Cpe12g00161 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.3e-126 449.9
Cpe15g00049 . 1 336 MRS2 Gene Family AT5G09690 64.6 1.1e-107 387.1
Cpe17g00172 CST 1 385 MRS2 Gene Family AT5G09690 60.4 1.5e-106 383.3
Cpe03g00907 CST 40 383 MRS2 Gene Family AT5G09690 50.9 6.8e-78 288.1
Cpe12g00161 CST 23 288 MRS2 Gene Family AT5G09720 66.8 4.3e-87 318.5
Cpe17g00172 CST 23 255 MRS2 Gene Family AT5G09720 63.6 4.0e-77 285.4
Cpe15g00049 . 38 296 MRS2 Gene Family AT5G09720 61.3 6.4e-75 278.1
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G80900 81.9 4.1e-198 688.0
Cpe07g00089 . 5 381 MRS2 Gene Family AT1G80900 54.4 2.1e-109 393.3
Cpe07g00680 . 114 481 MRS2 Gene Family AT5G22830 75.5 6.8e-148 521.2
Cpe20g00717 . 114 458 MRS2 Gene Family AT5G22830 69.3 1.3e-122 437.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00161 Cpe_Chr12 FPKM 1.949871 1.734551 2.109672 2.160535 2.703317 2.106714 2.433537 3.114976 2.998629 3.059238