Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00165 ATGTTCGTGAAGCTGCAGTATTTGGATACGCCCTGCTTCCCTGGATTGAGTTCCACCCTCAGGTCATCCACCGTCGGAGTCTCAATTTCTCCCCCTGATAATCTCGTCCCCATTTCCAGGAAGCCCAAACACTGCTGGATTCCTGAATGTCCGAACAGAGAGTCAAAGAACGTCGGTGGAGTTAAAAAATACACTAACGATAATAGTGGTCGCCGGCAGGAAACTCGCCTGAAAAAAGCGAGTAAAACGGAGGAACGAGAACCCCACAAAAGAAATCGCCATTTGGGTAATAGGGTTGTTGTGAAAAAGGATGAATGGGAAGATGGAAATGGGTCGGTGGAAAAAGTGCACCCCAAGTGTTCGACGAAATGCCTATCGTATGGTGGATGCATACCAGCGATTTTGCAGGCGTTGGATGAAGTCAGTGACTTGGATGAAGCACTGAAGCCTTGGAAAGACAAGCTTAACAACAAGGAAAGGAGTATAATTCTGAAAGAGCAGACCAGTTGGGAGAGGGCTTTGGAGATTTTCGAGTGGTTTAAAATGGCAGGTGGCTATGAAGTGAATGTGATTCACTATAATATTCTTCTTCGGATTCTTGGGAAGGCCCAGAAATGGAGACTAGTTGAGAGTTTGTGGGCAGAGATGAACAAAAGGGGTATTAATCCGATAAATTCGACTTATGGAACGTTGATCGATGTTTACGGGAAAGGGGGCTTTACAGAAGAGGCGTTGGCATGGCTTGAAAGGATGAATGAACAGAGAATGGAACCGGATGAGGTCACCATGGGAATTGTTGTTCAATTGTATAAGAAGGCTGGTGAGTTTCAGAAGGCTGAGAATTTCTTCAAGAAGTGGTCATCAAGAAACTCAACGAAATGTGAGATTACCAACCAGAACGAAGTAGCTTCTGCTAAAGTTGAGAATTCTCTGCACCCTCCTCATGTTAGTTTGAGTACCTATACATATAATACATTGATTGACACATATGGGAAGGCTGGACAGCTACAAGAAGCCTCAACGACTTTCGAAAGCATGCTAAACGAAGGAGTTGCGCCGACGACCGTGACTTTCAATACTATGATTCACATTTGTGGCAACCATGGCAAGTTGAAAGAAGTGACATTGCTAATGCAGAAGATGGAGGAGCTTCAATGCCCACCTGATACAAGAACATACAATATCCTCATTTCTCTTCATGCTAAGCACGATAACATTGACTTGGCTTCAAATTATTTTGCAGAGATGAAGGAGGCTTGTCTTCGGCCGGATATAGTGAGCTACCGTACTCTTTTGTATGCTTATTCTATCAGGCAGATGGTTGTGGAGGCTGAACAACTCGTAGCAGAAATGGATGAAAGGGGACTTGAGATCGACGAATTCACCCAATCGGCACTGACCCGTATGTATATCGATGCAGGAATGCTTGAAAAGTCATGGTCGTGGTTCTGGAGATTTCATCTTACAGGGCGTATGAGCTCCGAGTGTTATTCGGCTAATATTGATGCATATGGAGAGCGTGGATGTATTGTAGAAGCAGAGAGAGTTTTTGTCAGCTGCCAAGAAGAGAAGAAGCTCACAGTCCTTGAGTATAATGTGATGATTAAAGCCTATGGTGTGGCAAAGGATTATGTCAAAGCACAAAAATCATTTGATAGTATGGAGAGTAATGGCGTCACTCCTGATAAATGTAGCTATAGTTCTCTGATACAGATATTGTGTGGTGCTGACATGCCGGCCATGGCACTCTCTTATCTGAGGAAGATGCAGTCAGCTGGATTGGTAAGTGATTGCATTCCATATTCGGTGGTTATATCGAGCTTTTCGAAACTTGGTTATTTGGAAAAGGCGGACGAACTTTATAGAGAGATGATCGAACATGGTATGCAGCCTGATATCGTTGTTTATGGTGTGCTGATAAATGCTTTTGCTGATGCTGGGAGTGTTAGAGAAGCTATTGGTTATGTCGACGCAATGAAACGGGCTGGTTTGCCCGGTAATACCGTTATATACAACTCGTTGATAAAGCTCTACACCAAAGTTGACTACCTCAAAGAAGCACAGGAAGCATACAAGATGCTTCAGCAAACAGATGATGGTCCAGCTATCTATTCTTCGAATTGTATGATCGACATTTATAGCAAACGTTCGATGGATAAACAAGCGGAAGAGATTTTCGAGAGGTTGAAGAGAAAGGGAGAAGCAAATGAGTTCACTTTTGCAATGATGTTGTGCATGTACAAGAAAAAAGGAAGATTACAGGAAGCCATTAGTATTGCAAGACAGATGAAGGAACAAGGACTTTTAACAGAATTGTTGAGCTTCAATAACATGATCAGTTTATACGCTATGGACGGTCGATTCAAGGAGGCGGTTAGTACATTCCAAGACATGATTAAAACTTCCATTCAACCTGATGAATGCACGTATAAATCGCTCGGGGTCATTCTGTTAAAATGTGGCGTTTCGAAGCAGGCAGTCAGAAAGCTAGAATTATCGGTAAAAAAGGACGCTCAGAGCGGATTACAGGCGTGGGGTTCGGTTCTATCTTCTGTTGTTGGAATGAGTATCAAGGATGATTATCTATAA 2589 43.11 MFVKLQYLDTPCFPGLSSTLRSSTVGVSISPPDNLVPISRKPKHCWIPECPNRESKNVGGVKKYTNDNSGRRQETRLKKASKTEEREPHKRNRHLGNRVVVKKDEWEDGNGSVEKVHPKCSTKCLSYGGCIPAILQALDEVSDLDEALKPWKDKLNNKERSIILKEQTSWERALEIFEWFKMAGGYEVNVIHYNILLRILGKAQKWRLVESLWAEMNKRGINPINSTYGTLIDVYGKGGFTEEALAWLERMNEQRMEPDEVTMGIVVQLYKKAGEFQKAENFFKKWSSRNSTKCEITNQNEVASAKVENSLHPPHVSLSTYTYNTLIDTYGKAGQLQEASTTFESMLNEGVAPTTVTFNTMIHICGNHGKLKEVTLLMQKMEELQCPPDTRTYNILISLHAKHDNIDLASNYFAEMKEACLRPDIVSYRTLLYAYSIRQMVVEAEQLVAEMDERGLEIDEFTQSALTRMYIDAGMLEKSWSWFWRFHLTGRMSSECYSANIDAYGERGCIVEAERVFVSCQEEKKLTVLEYNVMIKAYGVAKDYVKAQKSFDSMESNGVTPDKCSYSSLIQILCGADMPAMALSYLRKMQSAGLVSDCIPYSVVISSFSKLGYLEKADELYREMIEHGMQPDIVVYGVLINAFADAGSVREAIGYVDAMKRAGLPGNTVIYNSLIKLYTKVDYLKEAQEAYKMLQQTDDGPAIYSSNCMIDIYSKRSMDKQAEEIFERLKRKGEANEFTFAMMLCMYKKKGRLQEAISIARQMKEQGLLTELLSFNNMISLYAMDGRFKEAVSTFQDMIKTSIQPDECTYKSLGVILLKCGVSKQAVRKLELSVKKDAQSGLQAWGSVLSSVVGMSIKDDYL 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1082960 1085548 + Cp4.1LG12g01580.1 Cpe12g00165 478162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Cpe12g00165 862 MobiDBLite consensus disorder prediction 57 93 - -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Cpe12g00165 862 PANTHER OS03G0162900 PROTEIN 62 858 - -
Cpe12g00165 862 Gene3D Tetratricopeptide repeat domain 133 299 IPR011990 GO:0005515
Cpe12g00165 862 Pfam PPR repeat family 774 813 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat family 189 235 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat family 531 574 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat family 601 644 IPR002885 -
Cpe12g00165 862 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 62 858 - -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Cpe12g00165 862 Pfam Pentacotripeptide-repeat region of PRORP 324 485 IPR033443 -
Cpe12g00165 862 SUPERFAMILY TPR-like 228 693 IPR011990 GO:0005515
Cpe12g00165 862 Gene3D Tetratricopeptide repeat domain 309 541 IPR011990 GO:0005515
Cpe12g00165 862 Gene3D Tetratricopeptide repeat domain 660 853 IPR011990 GO:0005515
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Cpe12g00165 862 MobiDBLite consensus disorder prediction 67 93 - -
Cpe12g00165 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Cpe12g00165 862 Gene3D Tetratricopeptide repeat domain 542 659 IPR011990 GO:0005515
Cpe12g00165 862 SUPERFAMILY HCP-like 609 802 - -
Cpe12g00165 862 Pfam PPR repeat 669 695 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat 739 768 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat 705 733 IPR002885 -
Cpe12g00165 862 Pfam PPR repeat 261 289 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 531 562 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 634 667 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 774 807 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 601 633 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 738 768 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 193 223 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 356 390 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 565 598 IPR002885 -
Cpe12g00165 862 TIGRFAM PPR: pentatricopeptide repeat domain 426 460 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00165 - - - csv:101203255 1475.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00530 Cpe-Chr3:3106653 Cpe12g00165 Cpe-Chr12:1082960 9.86E-17 dispersed
Cpe12g00165 Cpe-Chr12:1082960 Cpe20g00024 Cpe-Chr20:127118 5.26E-10 dispersed
Cpe12g00165 Cpe-Chr12:1082960 Cpe15g00451 Cpe-Chr15:5608901 8.91E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g594 Blo01g00101 . . . . . . Bma05g01080 . Cmo17g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00871 . . . . . . . Cma17g00193 . Car17g00171 Cpe12g00165 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011985 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00165 Cpe_Chr12 FPKM 145.653152 160.522873 115.30349 112.189072 53.565239 50.68618 50.096684 40.026588 38.823345 37.998837