Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00166 ATGGAGCCCGGTGGTCCGCCCACGCCGCCGCCGCTCCCTCCTCTGCCTACCGGCGCTATACTCCTCGGCAAGTACCAATTGGGACGTTTCCTCGGTCGTGGAAGCTTTGCCAAGGTGTACCAGGCCTGTTCTCTTGCCGATAACTCCATCGTCGCCGTTAAAATCATTGACAAGAACAAAACCATCGATGCCGCTATGGAGCCGTGCATTGTCCGTGAGATTTCCGTCATGCGCCGTCTTCAGCACCATCCGAACATCCTCAGAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCTGGCGGTGAGCTTTTCGCGAAACTCCTCCGCCGTGGACGACTGACAGAATCAACCGCCCGCCGGTACTTTCAACAACTGGTCTCTGCTTTACATTTCTGTCACCAGAACGGTGTCGCTCATCGCGACATCAAGCCCCAAAATCTTCTACTCGATGAAGACGGTAACCTCAAGGTCTCCGACTTCGGTCTCTCGGCCTTACCAGAGCAGATCAAAGACGGAATGCTCCATACCGCATGCGGAACTCCAGCATACACCGCGCCGGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCTAAAGCCGACGCGTGGTCCTGCGGCGTTATCCTTTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGACAACAACCTGGTCGCCATGTACAAGAAGGTTTATCGACGGGAATATCACTTCCCCGATTCAATTTCGAAGCCAGCGAGACATTTGATCTTCCAATTACTGGATCCTGATCCGAATACAAGGATGAGCATGGAGGCGTTGATGCAGCATTCGTGGTTCAAGAAATCGCTGCGATCGAAGCCCCAAATTAACAACAAGAGCTTGTTTGAATCATTGGGTAATTACAAATCTGATTTAGGGGTTTCTGGGTTAAATGCGTTTCATATAATATCGATGTCTTCTGGGTTGGATCTGTCTGGATTGTTCGAGACAACGGATTGTAAGAAGAAGAGGTTCACGACGGGTGTGAGTATGGAGAAGGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTACAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTGGGGAAAGGAAGGATGATTCTGGTGGTGGAGGCTTTGAAAATAACCTCAAATCTGTTAATGGTGGAAGTGAAGGCAGCTGAATCCAAGATGGAGTTTGAGAGGACGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGGTTCCTGGCACTCAAATGAGTCAATGTGA 1293 50.66 MEPGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQACSLADNSIVAVKIIDKNKTIDAAMEPCIVREISVMRRLQHHPNILRIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYHFPDSISKPARHLIFQLLDPDPNTRMSMEALMQHSWFKKSLRSKPQINNKSLFESLGNYKSDLGVSGLNAFHIISMSSGLDLSGLFETTDCKKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALKITSNLLMVEVKAAESKMEFERTHWGDLKAKLQDIVGSWHSNESM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1086048 1087340 - Cp4.1LG12g01600.1 Cpe12g00166 478163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00166 430 CDD CIPK_C 312 414 - -
Cpe12g00166 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cpe12g00166 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 427 - -
Cpe12g00166 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00166 430 PANTHER SERINE/THREONINE KINASE 16 427 - -
Cpe12g00166 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Cpe12g00166 430 SUPERFAMILY Protein kinase-like (PK-like) 21 286 IPR011009 -
Cpe12g00166 430 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00166 430 Gene3D Transferase(Phosphotransferase) domain 1 18 310 - -
Cpe12g00166 430 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00166 430 Gene3D Kinase associated domain 1, KA1 311 422 - -
Cpe12g00166 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cpe12g00166 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01482 Cpe12g00166 CCT
Cpe12g00166 Cpe17g00170 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00166 Cpe-Chr12:1086048 Cpe10g00992 Cpe-Chr10:5638980 1.24E-130 dispersed
Cpe12g00166 Cpe-Chr12:1086048 Cpe17g00170 Cpe-Chr17:1082441 0 wgd
Cpe12g00166 Cpe-Chr12:1086048 Cpe03g01482 Cpe-Chr3:11725168 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62742 PF00069 Pkinase 2.20E-74 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00166 K12761 - csv:101215156 789.26