Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00172 ATGGAGATGGGGGAAGCTCTAACTAAAGAACAAATGGATGAGCTTAGAGAAGCTTTTCTTTTGTTTGATAAAAACAGAGATGGTTGCATCACACTCGATGAACTTAGAACAGAGATCAAAAAATTGGGTCAAAATCCCACGGAGGAAGAGCTGAAGGACATGATCAGAGAAGTCGATGCCGATGGCAATGGAACCATCGAGTTCTGGGAGTTTCAGATATTGATGTCCAAGATCATGAAGGAAGAAACAGAGCAGAAGCTCAAAGATGCCTTCAAGGTGTTTGATAAAAATCAAGATGGGTATATATCAGCAAATGAGTTGAGGCATGTTCATCTGATGCTGAATCTGGGGGAGAAGTTAACAGAAGAGGAAGTTCTTGAGATTATCAGAGAGGCTGATTTGAATGGTGATGGCCAAGTCGATTACCCTGAGTTCGTCAAGATCATGACTGAACATGCCTCAGAAATCCTATCAAAACGAGGCTTTTTCTAA 492 41.26 MEMGEALTKEQMDELREAFLLFDKNRDGCITLDELRTEIKKLGQNPTEEELKDMIREVDADGNGTIEFWEFQILMSKIMKEETEQKLKDAFKVFDKNQDGYISANELRHVHLMLNLGEKLTEEEVLEIIREADLNGDGQVDYPEFVKIMTEHASEILSKRGFF 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1120660 1121951 + Cp4.1LG12g01720.1 Cpe12g00172 478169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00172 163 ProSitePatterns EF-hand calcium-binding domain. 133 145 IPR018247 -
Cpe12g00172 163 SUPERFAMILY EF-hand 5 155 IPR011992 -
Cpe12g00172 163 CDD EFh 86 150 IPR002048 GO:0005509
Cpe12g00172 163 PANTHER CALMODULIN-LIKE PROTEIN 8 3 151 - -
Cpe12g00172 163 Gene3D - 77 161 - -
Cpe12g00172 163 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Cpe12g00172 163 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Cpe12g00172 163 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Cpe12g00172 163 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Cpe12g00172 163 Pfam EF-hand domain pair 13 75 IPR002048 GO:0005509
Cpe12g00172 163 Pfam EF-hand domain pair 84 150 IPR002048 GO:0005509
Cpe12g00172 163 SMART efh_1 124 152 IPR002048 GO:0005509
Cpe12g00172 163 SMART efh_1 50 78 IPR002048 GO:0005509
Cpe12g00172 163 SMART efh_1 86 114 IPR002048 GO:0005509
Cpe12g00172 163 SMART efh_1 14 42 IPR002048 GO:0005509
Cpe12g00172 163 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
Cpe12g00172 163 Gene3D - 2 76 - -
Cpe12g00172 163 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Cpe12g00172 163 CDD EFh 14 76 IPR002048 GO:0005509
Cpe12g00172 163 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Cpe12g00172 163 PANTHER CALCIUM BINDING PROTEIN 3 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00172 K13448 CML; calcium-binding protein CML - bhj:120092962 267.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00295 Cpe12g00172 CCT
Cpe03g01476 Cpe12g00172 CCT
Cpe08g00295 Cpe12g00172 ECH
Cpe03g01476 Cpe12g00172 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00172 Cpe-Chr12:1120660 Cpe18g00108 Cpe-Chr18:2709296 2.88E-62 dispersed
Cpe12g00172 Cpe-Chr12:1120660 Cpe15g00017 Cpe-Chr15:119531 1.79E-11 wgd
Cpe12g00172 Cpe-Chr12:1120660 Cpe17g00165 Cpe-Chr17:1054965 1.03E-08 wgd
Cpe12g00172 Cpe-Chr12:1120660 Cpe03g01476 Cpe-Chr3:11701996 4.50E-09 wgd
Cpe12g00172 Cpe-Chr12:1120660 Cpe08g00295 Cpe-Chr8:1891722 3.82E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g579 . Blo12g00346 . . . Bpe14g01216 . . . . Cma06g01355 Cma14g01760 . Car14g01586 Sed02g1356 Cpe08g00295 Cpe03g01476 Bhi01g00746 Tan10g0775 Cmetu05g0607 Lac12g2244 Hepe05g1596 . Lcy11g1593 Cla06g00617 Cam06g0655 Cec06g0659 Cco06g0664 Clacu06g0642 Cmu06g0636 Cre06g1403 . . Cone7ag0286 Cone4ag0279 Lsi05g01649 Csa02g01119 Chy05g00375 Cme06g00564 . Blo07g00237 Bda11g00603 Bda13g00097 . Bpe13g00582 Bma02g00820 Bma06g01576 . Cmo06g01370 Cmo14g01800 . . . Car17g00178 Cpe12g00172 . Bhi12g02245 . . . . . Lcy13g0316 Cla05g00500 Cam05g0549 Cec05g0562 Cco05g0560 Clacu05g0546 Cmu05g0518 Cre05g0586 Lsi09g01289 Csa03g01280 Chy06g00532 Cme05g00495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014362 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00172 Cpe_Chr12 FPKM 15.184742 15.510039 3.325634 4.462847 3.380764 3.36974 3.088272 0.265805 0.135788 0.143064