Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00174 ATGGAAGGAAAGCACCAAAACCTGATCCAAATCCCAAGAGTGAAACTGGGTAGCCAAGGATTAGAGGTTTCAAGGTTGGGTTTCGGATGTGCAGGACTTTCAGGCTATCTCAGCGCTCCCCTCTCTCATGAAGAAGGATGCAACATAATCAAACAAGCTTTCATCAAAGGAATAACTTTTTTTGATTCTTCTGATCTGTATGGTGCTGATCATGACAATGAAATGATGATTGGAAAGGTGGCTTTGAAACAGCTCCCGCGAGAGAAGATTCAGTTAGCTACAAAGTTTGGGATTATACCATTAGGAGGATTTGAAATTGCAGTTAAAGGGACACCTGAATATGTAAGGAACTGCTGTGAAGCGAGTCTCAAGCGCCTTCAAGTTGATTATATCGACCTCTACTATCAGCATCGTGTCGACATATCTGTGCCAATAGAAGAAACTATGGGAGAGCTAAAGAAGCTGGTGGAAGAGGGGAAGATAAAGTACATCGGGTTGTCTGAAGCAAGTGGAAACACAATCAGGAGAGCCCATGCTGTTCATCCGATCACTGTCGTTCAAATGGAGTATTCGTTGTGGAGTCGTGACATCGAAGATGACATAATTCCACTTTGTAGGGAGCTTGGAATTGGGATAGTGGCTTACAGTCCTCTGGGTCGAGGGTTCTTTGGGGGCAAAGCAATTGCAGAGAGCTTGCCAAGTGAAAGCTCATTGGCTTATCATCCAAGGTTCATCAAGGAGAGTTTAGAACAGAATGAAGCTATTTACAGAAGGCTTACTAACCTTGCTGTGAAGCACGGTTATACCACAGTTCAGTTGGCTTTAGCTTGGCTGCTCCATCAGGGTATTGATATTATTCCCATCCCAGGGACAACCAAACTTGGGAACCTTGACAGCAACATTGAGTCATTGGGTGTGAAGCTAACAGAGAAAGATTTCAAAGAAATTGGTGATGCCGTGCCGGTTGATGAAGTTAGAGGCCAGCGAGAATACGATGTTCTCACCAAATATATGTGGAAGTTTGCAGATACCCCATTAAGGAGTTGA 1047 43.94 MEGKHQNLIQIPRVKLGSQGLEVSRLGFGCAGLSGYLSAPLSHEEGCNIIKQAFIKGITFFDSSDLYGADHDNEMMIGKVALKQLPREKIQLATKFGIIPLGGFEIAVKGTPEYVRNCCEASLKRLQVDYIDLYYQHRVDISVPIEETMGELKKLVEEGKIKYIGLSEASGNTIRRAHAVHPITVVQMEYSLWSRDIEDDIIPLCRELGIGIVAYSPLGRGFFGGKAIAESLPSESSLAYHPRFIKESLEQNEAIYRRLTNLAVKHGYTTVQLALAWLLHQGIDIIPIPGTTKLGNLDSNIESLGVKLTEKDFKEIGDAVPVDEVRGQREYDVLTKYMWKFADTPLRS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1133995 1137169 + Cp4.1LG12g01710.1 Cpe12g00174 478171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00174 348 CDD AKR_AKR13D1 12 316 - -
Cpe12g00174 348 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 5 347 - -
Cpe12g00174 348 Pfam Aldo/keto reductase family 26 316 IPR023210 -
Cpe12g00174 348 SUPERFAMILY NAD(P)-linked oxidoreductase 13 319 IPR036812 -
Cpe12g00174 348 Gene3D - 11 348 IPR036812 -
Cpe12g00174 348 PANTHER ALDO-KETO REDUCTASE 4-RELATED 5 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00174 - - - zju:107423121 515.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01227 Cpe-Chr3:9966372 Cpe12g00174 Cpe-Chr12:1133995 1.68E-125 dispersed
Cpe03g01235 Cpe-Chr3:10033614 Cpe12g00174 Cpe-Chr12:1133995 4.20E-96 dispersed
Cpe03g01572 Cpe-Chr3:12166732 Cpe12g00174 Cpe-Chr12:1133995 1.75E-29 dispersed
Cpe07g00953 Cpe-Chr7:8637069 Cpe12g00174 Cpe-Chr12:1133995 1.54E-106 dispersed
Cpe12g00174 Cpe-Chr12:1133995 Cpe15g00407 Cpe-Chr15:5234138 1.73E-22 dispersed
Cpe13g00331 Cpe-Chr13:2964394 Cpe12g00174 Cpe-Chr12:1133995 3.14E-17 dispersed
Cpe12g00174 Cpe-Chr12:1133995 Cpe06g00568 Cpe-Chr6:3451932 1.50E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g561 . . . . . . . . . Cmo17g00198 . . . . . . . . . . . . . . Cla06g00614 Cam06g0652 Cec06g0655 Cco06g0659 Clacu06g0640 Cmu06g0634 Cre06g1401 . . . . . Csa02g01121 Chy05g00378 . . . . . . . . . Sed09g0732 . . . Cma17g00206 . Car17g00181 Cpe12g00174 . Bhi12g02241 Tan06g2480 Cmetu05g1903 . . . Lcy13g0314 . . . . . . . Lsi09g01291 . . Cme05g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001019 1 1 1 3 1 3 1 3 3 2 2 3 4 2 3 1 3 2 2 3 2 4 3 2 3 2 2 3 9 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00174 Cpe_Chr12 FPKM 10.104824 12.480601 10.166678 10.688124 28.150225 27.530041 26.878166 3.851243 3.349333 3.802513