Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00176 ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGTCGTTTTGCCTCAGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTCGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGAGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCAAATGAGGACGCACATATCCAATGAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA 1011 46.19 MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGASALRKVVVLPQVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNPELSSSSLEGYMNHQMRTHISNENLGQFATSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKDIQEC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1140816 1145265 - Cp4.1LG12g01830.1 Cpe12g00176 478173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00176 336 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 5 305 - -
Cpe12g00176 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cpe12g00176 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 305 IPR040390 -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 109 138 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 258 277 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 222 248 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 185 208 - -
Cpe12g00176 336 Pfam tify domain 144 172 IPR010399 -
Cpe12g00176 336 SMART tify_2 138 173 IPR010399 -
Cpe12g00176 336 Pfam Jas motif 244 268 IPR018467 -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 123 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00176 - - - csv:101204377 622.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00176 Cpe17g00164 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00176 Cpe-Chr12:1140816 Cpe12g00571 Cpe-Chr12:5803426 1.70E-08 dispersed
Cpe12g00176 Cpe-Chr12:1140816 Cpe17g00164 Cpe-Chr17:1038124 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g554 Blo01g00111 . . Bda08g00254 . . . Bma05g01092 Cmo08g01098 Cmo17g00201 . . . . . . . . . . . . . . Cla06g00612 Cam06g0650 Cec06g0653 Cco06g0656 Clacu06g0637 Cmu06g0631 Cre06g1398 Cone14ag0872 . . . . Csa02g01125 Chy05g00381 . . Blo07g00232 Bda11g00596 . Bpe05g00883 Bpe13g00588 . Bma06g01570 Sed09g0734 . . Cma08g01125 . Car08g01006 Car17g00183 Cpe12g00176 Cpe17g00164 Bhi12g02238 Tan06g2483 Cmetu05g1474 . . . . . . . . . . . Lsi09g01294 . . Cme05g00489
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe12g00176 CST 1 180 Tify Gene Family AT4G14713 52.6 4.0e-45 178.7
Cpe17g00164 CST 1 180 Tify Gene Family AT4G14713 51.6 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50295 PF06200 tify 3.00E-15 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00176 Cpe_Chr12 FPKM 13.675357 15.412726 12.286452 11.495116 15.323971 13.862144 15.405153 5.374496 4.419932 4.195027