Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00176 ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGTCGTTTTGCCTCAGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTCGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGAGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCAAATGAGGACGCACATATCCAATGAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA 1011 46.19 MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGASALRKVVVLPQVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNPELSSSSLEGYMNHQMRTHISNENLGQFATSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKDIQEC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1140816 1145265 - Cp4.1LG12g01830.1 Cpe12g00176 478173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00176 336 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 5 305 - -
Cpe12g00176 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cpe12g00176 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 305 IPR040390 -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 109 138 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 258 277 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 222 248 - -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 185 208 - -
Cpe12g00176 336 Pfam tify domain 144 172 IPR010399 -
Cpe12g00176 336 SMART tify_2 138 173 IPR010399 -
Cpe12g00176 336 Pfam Jas motif 244 268 IPR018467 -
Cpe12g00176 336 MobiDBLite consensus disorder prediction 123 138 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00176 Cpe17g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00176 Cpe-Chr12:1140816 Cpe12g00571 Cpe-Chr12:5803426 1.70E-08 dispersed
Cpe12g00176 Cpe-Chr12:1140816 Cpe17g00164 Cpe-Chr17:1038124 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50295 PF06200 tify 3.00E-15 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00176 - - csv:101204377 622.468