Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00177 ATGGCCGTAGTCCTCCACCACCACCACCGCCGCCGTCCTCCTCGCCCAACCCTTCTTCTTCTCGCCGCGCTTCTCCTCCTCGCCTCCGCCATTGCCGCCCGCCCCACCCCCATCGGTAAGTCCCTAAACTCAATTCCTCTAATTAACCCATTTCTGGGTTTTACAAAAACAGAGGAAACAGAGTTTCCAGCTGTGACACGGCGGAGACTCCGCGGGCTAGGGTCGTCCCCACCGATTTGTAGATCCAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACGTCCCAATTCAGCCGGGACTGAGTTTGCCGTCGGAGTATTACCCAGAAGCTTGGCGGTGCAAATGCGGCAACTCCCTTTATTTGCCATGA 372 58.6 MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEETEFPAVTRRRLRGLGSSPPICRSKCGSCSPCTAVHVPIQPGLSLPSEYYPEAWRCKCGNSLYLP 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1147777 1148148 + Cp4.1LG12g01730.1 Cpe12g00177 478174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00177 123 Pfam Epidermal patterning factor proteins 73 123 - -
Cpe12g00177 123 PANTHER PUTATIVE, EXPRESSED-RELATED 17 123 - -
Cpe12g00177 123 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 17 123 IPR039455 GO:0010374
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00177 - - - csv:101204137 136.732
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00282 Cpe12g00177 CCT
Cpe12g00177 Cpe17g00163 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00177 Cpe-Chr12:1147777 Cpe20g00907 Cpe-Chr20:8029788 4.12E-21 dispersed
Cpe12g00177 Cpe-Chr12:1147777 Cpe17g00163 Cpe-Chr17:1030802 1.90E-33 wgd
Cpe12g00177 Cpe-Chr12:1147777 Cpe08g00282 Cpe-Chr8:1817988 4.78E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g553 . . . . . Bpe14g01211 . . Cmo08g01099 . Cma06g01374 . . . Sed01g1229 Cpe08g00282 . Bhi01g00762 Tan10g0793 Cmetu01g2381 . . . . Cla06g00611 Cam06g0649 Cec06g0652 Cco06g0655 Clacu06g0636 Cmu06g0630 Cre06g1397 Cone14ag0871 . Cone7ag0276 Cone4ag0269 Lsi05g01635 Csa02g01126 Chy05g00382 . . . . Bda13g00101 . Bpe13g00589 Bma02g00823 . . Cmo06g01386 . Cma08g01126 Cma17g00208 . Car17g00184 Cpe12g00177 Cpe17g00163 . . . . . . . Cla05g00511 Cam05g0562 Cec05g0574 Cco05g0572 Clacu05g0559 Cmu05g0530 Cre05g0599 Lsi09g01295 Csa03g01293 . Cme05g00486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000639 2 2 1 6 6 3 1 3 3 2 3 3 7 2 3 2 3 3 5 3 3 3 2 3 2 3 3 5 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00177 Cpe_Chr12 FPKM 0.980747 0.810104 7.41021 7.282853 26.293636 25.637253 24.857431 4.30178 4.211909 4.565014