Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00192 ATGGAAGAGGACCCGTTGATCTCACCTGTAGATGGAGAGTTGTCCTCTGATAGTAATAATGGTGATTCTGGATACTGGTTGAGTGGAGTCAAATTCTTTGGTGTAGATTTAACCCCTGATAATGTTGCTGTTGCAATGGTGTATTTTGTTCAAGGAGTTTTAGAACTTGCAAAGCTTGCTGTCAGTTTTTATTTAAAAGATGATTTGCATTTAGATCCTGCTGAGTCAGCTGTAATTTCTGGTTTCGCAGCATTGCCATGGCTGATCAAACCCCTCTATGGGTTTATTAGTGACTCTGTTCCTCTTTTTGGTTACCGAAGAAGGTCATACTTGATTTTATCAGGGCTTCTTGGTGCATTCTCATGGAGCTTTATGGCCATCCTTGTTAATAGCAAGTATGGTGCTGCTATGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGTGGTAGACTCGATGGTCGTAGAGAGGGCTCGTGGTGAATCACCAAGTATGTCCGGTTCTCTCCAGTCGCTATGCTGGGGATCATCTGCTTTTGGTGGTATTGTTAGTTCCTACTTTAGTGGCTCCCTGGTGGATTCTTATGGTGTAAGGTTTGTATTTGGAGTAACAGCCTTGTTACCTTTGATGACAGCAGCAGTTGCTGTTCTTGTTGAAGAAAAGCGTGTTTATGCCTCATTAAATGAGCCTAATCTTCCTAAAACTGGCTTGAGTTTTCTTGAAACCTCTAAACAGCACATATTTAATATATGGACTGCTATTAGACAGCCAAATATATATCTTCCCACACTATTCCTTTTTCTGTGGCAGGCAACGCCACAATCAGACTCGGCAATGTTCTTCTTTGTCACAAATAAACTCGGTTTCACCGCCGAGTTTCTTGGACGAGTTAAGCTGGTTACTTCTGTTGCATCTTTGATTGGTGTAGGATTATACAATGGGTTTCTTAAAAATGTTGCGTTGAGGAAAATTTTTCTAATCATGTCAATAGTTGGTTCAGCTCTTGGGATGACACAGGTTCTTCTTATTACTGGATTGAATCGAAAGTTCGGCATAAGCGATGGTTGGTTTACTATTGGGGACTCTTTAATCATCACAGTTCTTGGTCAGGGAATGGAAGCCACACTTTTTGCAACACTCATGTCAGTATTCAATGGAGGGAACCTTCTTGGAGGTCTGATAGGCGCTGCTTTGACTCAACTCTTTGGTATCACTAAAGATACATTTAACAATTTAACCACTCTAGTAATCATATGCAATCTGAGCTCATTGCTACCTTTGCCCCTCCTTGGCCTTCTTCCAGAGGAAACTCCTGATCCCACCTCAAAACACAGCTCAGATGTTGAAATGAAACCAATT 1368 41.45 MEEDPLISPVDGELSSDSNNGDSGYWLSGVKFFGVDLTPDNVAVAMVYFVQGVLELAKLAVSFYLKDDLHLDPAESAVISGFAALPWLIKPLYGFISDSVPLFGYRRRSYLILSGLLGAFSWSFMAILVNSKYGAAMCILLGSLSVAFSDVVVDSMVVERARGESPSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDSYGVRFVFGVTALLPLMTAAVAVLVEEKRVYASLNEPNLPKTGLSFLETSKQHIFNIWTAIRQPNIYLPTLFLFLWQATPQSDSAMFFFVTNKLGFTAEFLGRVKLVTSVASLIGVGLYNGFLKNVALRKIFLIMSIVGSALGMTQVLLITGLNRKFGISDGWFTIGDSLIITVLGQGMEATLFATLMSVFNGGNLLGGLIGAALTQLFGITKDTFNNLTTLVIICNLSSLLPLPLLGLLPEETPDPTSKHSSDVEMKPI 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1225788 1230434 + Cp4.1LG12g01900.1 Cpe12g00192 478189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00192 456 CDD MFS_FBT 42 423 - -
Cpe12g00192 456 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 29 446 - -
Cpe12g00192 456 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 29 446 IPR039309 -
Cpe12g00192 456 SUPERFAMILY MFS general substrate transporter 45 440 IPR036259 -
Cpe12g00192 456 TIGRFAM fbt: folate/biopterin transporter 43 453 IPR004324 GO:0016021
Cpe12g00192 456 Gene3D MFS general substrate transporter like domains 42 449 IPR036259 -
Cpe12g00192 456 Pfam BT1 family 51 439 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00192 - - - cmax:111499111 824.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00268 Cpe12g00192 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00289 Cpe-Chr11:1563201 Cpe12g00192 Cpe-Chr12:1225788 3.98E-41 dispersed
Cpe11g00291 Cpe-Chr11:1586785 Cpe12g00192 Cpe-Chr12:1225788 8.88E-26 dispersed
Cpe12g00192 Cpe-Chr12:1225788 Cpe16g00165 Cpe-Chr16:3743671 3.38E-33 dispersed
Cpe12g00192 Cpe-Chr12:1225788 Cpe03g01443 Cpe-Chr3:11545360 0 wgd
Cpe12g00192 Cpe-Chr12:1225788 Cpe08g00268 Cpe-Chr8:1728547 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g521 Blo01g00123 . . Bda08g00239 . . . Bma05g01105 . Cmo17g00216 Cma06g01399 Cma14g01717 Car06g01207 Car14g01551 Sed02g1305 Cpe08g00268 . Bhi01g00795 Tan10g0827 Cmetu06g2498 Lac12g2270 Hepe05g1561 . Lcy11g1554 Cla06g00593 Cam06g0632 Cec06g0635 Cco06g0638 Clacu06g0618 Cmu06g0611 Cre06g1379 . Cone15ag0834 . . Lsi05g01614 . . Cme06g00600 . . . . Bpe05g00897 . . . . Cmo06g01403 . . . . Car17g00202 Cpe12g00192 . Bhi12g01699 Tan06g2513 . . . . . Cla05g00533 Cam05g0584 Cec05g0594 Cco05g0592 Clacu05g0581 Cmu05g0551 Cre05g0620 Lsi09g01311 Csa03g01316 Chy06g00568 Cme01g01574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00192 Cpe_Chr12 FPKM 5.187371 5.979306 39.364391 39.095654 4.977901 4.37523 4.101042 39.700169 38.844078 38.03196