Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00199 ATGGAGGACGGCGTGAGATCTGGGGGACCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTNTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGCAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTATGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGATTTAATCAACCGGATGGATGTGGATGGTTTACGAAGAAATGTGGAGACCTTAGAGGTTTTTGATTTCAATGAGTACGATGAAACTGACGGCGAGACTCGGCGGAGGAAGAGTTTTAATGACAGTGGAGGACAGTTTCTTGGTTCCATGAAACTGCCTCGAAGTGGCATCGACAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAACTTGTATGCAGAGCAAACCGATTGCTTTGATCGAGATAGGCCTCCCCGAAAGATTAGCTTTGAGTCGGATAATGACGGACCTCATCTCCCAACATCCTTGTTGAGAGATAAGTTTAGGGGTCACTCTGAAGAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTAAAGGTCCTGGTAAACAAGAAGAAAAATGTGAGTGGATCATCCGAGATGTATGATCATTGCAAATTAGAAGAAAGTAGAAAGAGTCGAAGGACTGAAGATACTCTGAAGACGAAAGTGACGGTTACACCTTCAGTGTACCCAGAAACTAAGCTGAATGTGAAACAGGATCCCTTTTCTAAGCCAGAGAAAGACCGGACAGATTTTCAAACACCGTCATCAACAAAAAACATAAAGGGTTGCAGTTGGGATTCAGGTGACAGTAGTGTGTCATTGAAGCCGAGAAAAAAGGTTGTTGAAGCTCATAAATCTACCAAGAGGGCAAGTTGTGAAGTTGAAAAACTTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAATAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCGGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCGGTCTATGTTAATCCCAGTGGCACGGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTGAATGAAGAAGGTGCAGAGGCTAAGCCTAGTGCTGATGGTTCATTTACGCCAATATCAGATGATATTCTCAGTCAATTAACTAGGAAAACTCGAAAGAAAATTGAGAACAAATGGAAAAATAAGCAGAGAGATGATAGTGACAGTGAAAATGCCAGAGAAGCAAGTGCACTGAGGTCTGCTGGTACAAAAAATGACATGGACAGCATGGACAGTGATAGCAATGAAGAAAAGTTGAGCACTTTCGTAAAGCAGGGTGGAAAATCTTGTAAAATTAAATTGAACGAGAATGGGTGTCCCAGTGTCAACTCCAAAGGTCAAAGCTCCGGTAAGTATTCACGTGATACCACTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAATAGGGGATTAGATTCAGAGAATGATGGATTTGTTCCATATACTGGTAAGAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACTGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACTAGAGACGGTATTCATTGCGGTTGCTGTAGCAAAATCCTCACTGTCTCAAAGTTTGAGATACATGCTGGAAGCAAATTACGTCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCGCTTTTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCTAAACGTCTCAGTTTCCACACAGTTGAAGTTGATGGTGATGATCCGAATGACGATACATGTGGCATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGATGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCGGGAGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAATGTTGATATTTCTCAGGGAGAAAATACCATTGTTCCTGAAATATCTACTTGTGTGTTATGCGAGAAAAAGTTTCATGAATCCTGCAGTGCGGAAATGGATACTCCTGTTCAGTCCAATGGTTCAGTCACCTCTTTTTGTGGCAAGAATTGCAGAGAGACTAATTATAGTATTTTACAGCTTTTTGAGAATTTGCAGAAGTATCTGGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTGTCCGTAGAACAAATGAAGATCTGGATGTATCTGTTCGTGGGCTTTCTCAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCAATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTACAACTGCGGATCAAACTTTTATAGGCTTAATTATAGTGGCTTCTACACTGCCATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCGACAATCAGGTTTCATTGCACCAAGTTAGCTGAGATGCCATTCATCGGAACCCGCCATATATATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCGATCGAATCTGCTCTCCGCACGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCATACATGGAATGTGATTTTTGGCTTTAGTTCTTTGGAGCCATCACTCAAACAAGAAATGAGATTGATGAACATGTTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCCAAGAGTCAATTGTTGAGGAGAATCCTTCTACTGGCTCAGGTTTTTGCTTAGAAGGTGCAAAGCGAACGGATTGTAGAAGTACAGAGTTTAGTAGTCCTAAGATCGATACAGAGACCTCGTCTGGCCACGAACCTCGAAGTTGTGATGACACTGAACAGCATCACTTTAAGGCGAAAACAAATGAAGTTGCTGTCACTAATCCGAATCCTGAATCCGTGTCTGTTTCTCTAAATGATACTTCTACTGCTAATAGTCCTCTGGATGCATTTTGTGAAGCTAAAATGCCGTGTTCTCCTATGCAAACCGTAACTTTGGATTCTGATTCCGATGATAAGCCTGGAATTCGGCATGGTTTAGAGGATCGTTCGCAGTCGACTTCCCAATGTATGGCAGCTGATACGTCTTTGAACAATTTTCTTGAACCTAAGGTCAAGGTTTCAAATGAAGGAATAATTTGTTCCAACGCTCATGCTGGGCACAAGTTGGCTGACTCCGTTTACGTGAGGAAATCTTTTTCTCCTACTACAGGCAATGGCACGTTTGAGCTCGAAAACGTGCCATCCATAATGGATTCTCCTGAAGATGATGCACATGCTAATTCTCTTAAACCTACTCGACCCTTCGAAACTACATCGGATTGCAAAAATGCAATAGCTTATGTGAAAGAAGCTATTTCTGATGGAATTTGTGGCAGTGAAAATTCTCCACAGTCGTGTGGGGCAAAAGCCAGAGGTGGTCTTCAGGAAGAGAGAGCTGAATCTGGTTCAGTTTGA 3720 42.69 MEDGVRSGGPSGVLVKTRNSSGCLIXSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVMDESGSIRKKDRLQYVKRNDDDLINRMDVDGLRRNVETLEVFDFNEYDETDGETRRRKSFNDSGGQFLGSMKLPRSGIDREFGTASSRHALVDKRKNLYAEQTDCFDRDRPPRKISFESDNDGPHLPTSLLRDKFRGHSEEAIRVQGKNGVLKVLVNKKKNVSGSSEMYDHCKLEESRKSRRTEDTLKTKVTVTPSVYPETKLNVKQDPFSKPEKDRTDFQTPSSTKNIKGCSWDSGDSSVSLKPRKKVVEAHKSTKRASCEVEKLPCEETPPSTAKEGKIKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPSGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIENKWKNKQRDDSDSENAREASALRSAGTKNDMDSMDSDSNEEKLSTFVKQGGKSCKIKLNENGCPSVNSKGQSSGKYSRDTTVKSSSGSNSRILHGRRGRKLGLLVRGSNRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVANVDISQGENTIVPEISTCVLCEKKFHESCSAEMDTPVQSNGSVTSFCGKNCRETNYSILQLFENLQKYLGVKHELDAGFSWSLVRRTNEDLDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHCTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRTLKVEKLIIPAIAELMHTWNVIFGFSSLEPSLKQEMRLMNMLVFPGTDMLQKLLIQESIVEENPSTGSGFCLEGAKRTDCRSTEFSSPKIDTETSSGHEPRSCDDTEQHHFKAKTNEVAVTNPNPESVSVSLNDTSTANSPLDAFCEAKMPCSPMQTVTLDSDSDDKPGIRHGLEDRSQSTSQCMAADTSLNNFLEPKVKVSNEGIICSNAHAGHKLADSVYVRKSFSPTTGNGTFELENVPSIMDSPEDDAHANSLKPTRPFETTSDCKNAIAYVKEAISDGICGSENSPQSCGAKARGGLQEERAESGSV 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1264968 1272681 - Cp4.1LG12g01940.1 Cpe12g00199 478196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 1009 1037 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 500 532 - -
Cpe12g00199 1239 SMART PHD_3 675 715 IPR001965 -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 1021 1037 - -
Cpe12g00199 1239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 779 IPR013083 -
Cpe12g00199 1239 ProSiteProfiles Zinc finger PHD-type profile. 673 717 IPR019787 -
Cpe12g00199 1239 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 30 1145 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 267 296 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 458 472 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 1084 1106 - -
Cpe12g00199 1239 SUPERFAMILY FYVE/PHD zinc finger 664 720 IPR011011 -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 164 188 - -
Cpe12g00199 1239 CDD PHD2_CHD_II 676 714 - -
Cpe12g00199 1239 ProSitePatterns Zinc finger PHD-type signature. 676 714 IPR019786 -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 1210 1239 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 164 181 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 497 533 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 1167 1187 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 430 457 - -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 268 282 - -
Cpe12g00199 1239 PANTHER PHD FINGER FAMILY PROTEIN 30 1145 - -
Cpe12g00199 1239 Pfam PHD-finger 676 717 IPR019787 -
Cpe12g00199 1239 MobiDBLite consensus disorder prediction 409 485 - -
Cpe12g00199 1239 Pfam Tify domain binding domain 598 648 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00199 - - - cpep:111807565 2313.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00199 Cpe17g00147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00199 Cpe-Chr12:1264968 Cpe16g00662 Cpe-Chr16:6958523 3.76E-86 dispersed
Cpe12g00199 Cpe-Chr12:1264968 Cpe12g01032 Cpe-Chr12:8602945 0 wgd
Cpe12g00199 Cpe-Chr12:1264968 Cpe17g00147 Cpe-Chr17:939351 0 wgd
Cpe12g00199 Cpe-Chr12:1264968 Cpe17g00858 Cpe-Chr17:6657260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50297 PF16135 TDBD 3.80E-22 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00199 Cpe_Chr12 FPKM 6.328753 8.487739 7.68399 8.193274 14.242579 14.450235 14.004566 12.753524 11.737423 13.233409