Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00200 ATGAATGGCGCTACAGCAACAGATTCTGAAGCAGACATCTCTGAATATGTCGAAGTTGATCCCACCGGCAGATATGGAAGATACAATGATGTTCTTGGCAAAGGAGCATCCAAGACAGTTTACAGAGCTTTCGATGAATACGATGGCATTGAAGTGGCATGGAATCAAGTGAAGCTCTGTGATTTCCTTCAAACCCCTGACGATCTCGAGAGGCTATACAGAGAAATCCATTTATTGAAGACGCTAAAACATAAGAACATAATGAAATTCTGTTCTTCCTGGGTCGACACTGCTAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCCGGGACTCTCAGACAATACAGGCTGAAGCACAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTACAAGGGCTTCATTATCTTCATAGCCATGATCCTCCTCGAGATGGCGATGAATCACATGGAGGAGCATCAGAACAGCTGAAGTTCAAGAAGGAAGAAAGTAGTGTACATAAGAACAATAATGATCATCAAACAGAATTCCGAATGAGAAACTCGAGCTCATCGAATCGTTTGGTGTCATTTGCCGATGATCCTGAGAACGAGATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGTTAAGGGATCAACAATTAGGAGTCAAGGTAAAATCTTTCAGCTTACAGCCGAATCCGAACCTTGCCGAGACTGACCGTGGAGCTTTCGTATCGTTGCTTTCACCAAATATCAATGAAGCAGCAAAACATAAGGCTGGTATCACTTCACATTCCCCTCATGTTGCTGCTGACAACGTGTTGGAAAACCGAACCTTTCAAGACGACAGCTTCGATGTCGACGAGTCGGGTAGTCCCGAGCTGATGATTACGGCCAAGAGCTTCTATGCAGGGACATTGTTACCTTATTCTCTACAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 999 43.24 MNGATATDSEADISEYVEVDPTGRYGRYNDVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPDDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILQGLHYLHSHDPPRDGDESHGGASEQLKFKKEESSVHKNNNDHQTEFRMRNSSSSNRLVSFADDPENEIRQELRWLKAKYQMQLRELRDQQLGVKVKSFSLQPNPNLAETDRGAFVSLLSPNINEAAKHKAGITSHSPHVAADNVLENRTFQDDSFDVDESGSPELMITAKSFYAGTLLPYSLQRATSLPVDAIDF 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1274157 1277375 - Cp4.1LG12g01970.1 Cpe12g00200 478197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00200 332 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 149 - -
Cpe12g00200 332 SUPERFAMILY Protein kinase-like (PK-like) 21 146 IPR011009 -
Cpe12g00200 332 Coils Coil 206 226 - -
Cpe12g00200 332 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 149 - -
Cpe12g00200 332 MobiDBLite consensus disorder prediction 144 195 - -
Cpe12g00200 332 ProSiteProfiles Protein kinase domain profile. 26 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00200 332 MobiDBLite consensus disorder prediction 144 181 - -
Cpe12g00200 332 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Cpe12g00200 332 Pfam Protein kinase domain 30 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00200 332 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 161 321 - -
Cpe12g00200 332 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 161 321 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00200 Cpe17g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00200 Cpe-Chr12:1274157 Cpe20g00266 Cpe-Chr20:1491133 9.98E-73 dispersed
Cpe12g00200 Cpe-Chr12:1274157 Cpe17g00146 Cpe-Chr17:934227 1.68E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62743 PF00069 Pkinase 1.40E-17 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00200 K08867 - csv:101210511 280.411