Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00202 ATGGCTTCTTCTTTGGATTGCCTCCTTTTCGATTTGGATGACACTCTGTACCCTTTCAGCACTGGAATTGCAGCTGCTTGCAAGAAAAACATCGAAGATTTTCTCATCGAGAAATTTGGATTCCCGAAAACCCAAGCTCCGATTCTCCGGACAGAGCTTTTTAAAACATACGGCAGCACTCTGGCTGGTTTGCGAGCATTGGGCTATGACATTCATGCCGATGATTACCATGATTTCGTGCACGGGAGGCTGCCGTACGACCGGATCAAACAGGACTTTCAGCTCCGGCGTCTCTTACTGACTATTCCGCAAAGAAAAATCATATTCACGAATTCCGACATGAAGCATGCGACCGAAGTTCTCGGTCGATTGGGCTTAGAGGGTTGTTTCGAGAAGATCATATGTTTCGAGACGATGAATCCAAATCTTCCGACGGCGACTCGGCCGAACGAGTTCCCGGTCGTTCTCAAGCCGTCGATGGACGCCATGAGAATCGCTCTAGACGCCGCCGACATTGACCCCCGTCGTACGCTGTTCCTCGACGACAGCCTCCGCAACATCGCCGCCGGAAAAGCCATCGGCCTCCGTACCGTTCTGGTGGGAAAATCATCGAAGAGTAAGGAGGCGGATTATGCGATGGAGGCGGTGCTTAATTTGGCACAAGTAGTTCCAGAGATACGGGTAGCTATAGAATCAAACAGTGGCAATGAAATGATCAATCGGAGTCGGAGCGAAGTTGATTTGGTTCTCATGGCAACAACTGTCGGTGCTTAG 774 50.13 MASSLDCLLFDLDDTLYPFSTGIAAACKKNIEDFLIEKFGFPKTQAPILRTELFKTYGSTLAGLRALGYDIHADDYHDFVHGRLPYDRIKQDFQLRRLLLTIPQRKIIFTNSDMKHATEVLGRLGLEGCFEKIICFETMNPNLPTATRPNEFPVVLKPSMDAMRIALDAADIDPRRTLFLDDSLRNIAAGKAIGLRTVLVGKSSKSKEADYAMEAVLNLAQVVPEIRVAIESNSGNEMINRSRSEVDLVLMATTVGA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1301052 1303274 + Cp4.1LG12g02040.1 Cpe12g00202 478199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00202 257 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 2 254 - -
Cpe12g00202 257 Gene3D - 94 235 IPR023214 -
Cpe12g00202 257 Gene3D - 3 89 - -
Cpe12g00202 257 SFLD C1.5.3: 5'-Nucleotidase Like 3 227 IPR010237 -
Cpe12g00202 257 PANTHER HYDROLASE, SUBFAMILY IA, VARIANT 3, PUTATIVE-RELATED 2 254 - -
Cpe12g00202 257 SFLD Haloacid Dehalogenase 3 227 - -
Cpe12g00202 257 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 6 200 IPR010237 -
Cpe12g00202 257 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 155 200 IPR006439 -
Cpe12g00202 257 SUPERFAMILY HAD-like 1 210 IPR036412 -
Cpe12g00202 257 Pfam Haloacid dehalogenase-like hydrolase 8 200 IPR041492 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00202 K07025 K07025; putative hydrolase of the HAD superfamily - csv:101214793 418.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00202 Cpe17g00144 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00202 Cpe-Chr12:1301052 Cpe20g00830 Cpe-Chr20:7493130 1.75E-72 dispersed
Cpe12g00202 Cpe-Chr12:1301052 Cpe17g00144 Cpe-Chr17:919674 1.72E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00202 Cpe_Chr12 FPKM 23.823296 26.718063 10.055804 10.884722 2.656273 2.240843 2.866603 30.537502 29.189444 29.969841