Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00204 ATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCCAACGGGCTCTCTAGACGGAGATACAGGACTAGTAGTCTCCGTGACTCTCCAGATGGAGGTGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGATGAAGAAGACGACGATGGCGGCGGTGGTGGTGGTGGTGGTGGAGCGTCCGTCAGAATGCTTCCGCCAAATCCGGCGGCGATCTTGAGCCATCGGAAGACTTTTCCACCGGCGAAGAGTTTCAGAGCAGCACCATCGTGGAAAGCAGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACGAAACGGTCTCATGAATGTTGGCCAGCAGCGACGGGCGGCGGAACGGTTATAGAGGCCATTAACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACAGCAATGGCGGCGACGTTTCAGCCTCCAGCCTCGCCTTCTTCTTCCAATGCTCCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACTCCGGCCGCTCAAATCCTCCTCAAAACCATCATCCACGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGTATGATGAGACAGCCTCAAGGTCCTCCCAAACAAGAACCCTCTACCACTGATTCCATGAAGTTCGATTCCAAATCAACCACTGATGCCAAATCCAGAGTTTCATCGCCGATTTCCAACTCTTCTGATTTGCCTACCCCTTCCATTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAACCACAGCACCCAAGAGGAAAAGACCGCGTCCTGTGAAGTACGACGACGAGAACACCGCCACCTTCAGCCTTCGGAATAGCCCCATTTCATCAAGAGCCAAAGCTGAGGCCGATCAGCCGCCTACCAACGCCGAGATCCCTTCATCAAATGTGGACAAAGTTTCAGGATCTGCAGGTGAAAATGTAGTTTCAAATGAATCTGCTAATTCTCTGGCTTTACCGGAGTCCCGTCCAGAATCTATGAAGGTGGACGCAACCAGTGCCATGCCCAATTCCAAGCCATTGACTGAAGAATCAGACGGCAAAGATTTGGGTTCTAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTAGAAGATAAGCGAGAGGATATGACAGCGACTAAATCAAATTCATCAACATTCGATGCTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTAATGGCTCCTCCACCATTACGAGCTTCTCCGGAAAGAGAGGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAATGAAGACGACAAAGGAACAATCAGACTTGGGGGGGCTAAAGAGGCGCTGAACGTGGAGTCGAAGGCTATACCAGCTGAAGAAGCTGATTCAAAGAATCCCATTGCTTGCAAAGATAGGAATTTTGACCTTCAGCTTGATTTAGTTAAGACGATTGATAGAGATGGCCCCAACAAGCTCCACCAGCATGTGCAGAAACAGCTGCCGCAACCCAGCTCGGAAAAGGCTGGATCTGCCGTACAAGCGGGCTCTCTTCCTTTGCCCATGTCTCTACCTGGCTGGCCAAGTGGGCTGCCTCCTATGGGATATGTGGCACCACTACCAGGAGTTGTGTCTGTGGATGGAAGCGCTTTGCCTGCTGCTGCCATGCAGCCGCCAAATTTCCTTTTTCCTCAACCTCGGCCGAAGAGGTGTGCTACGCACTTCTACATTGCTCGGAATATATTGTATCATCAACAAATTGCGAGGATGAATCCATTCTGGCCAGCAGCCGCAGGTTCTGCTTCCTTGTTTGGGGCCAAGCATGGTAATCTCAGCATCGTGCCCTCTACAGATTTGCAAGGAAATCTTCCGAAAAGCGGGGTAAATGCAATGCAGGATAAGGGACAGAGCCTCGGAATGTTTACGGGTCATGCTGGGAAGGATAGGGGTTCTCAAGCTGTTAACGTTGTCGATGCCTCTCAGAGAAAGCAAATTTTGCTTCAGCAAGCTCTACCGCCGGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCATTCTGCCTCTGAGCCAGCAGCAACAGGCAGCTGTAGCCACATCGGTTCGGCCAGTTTCTGTGAAGTCTCCTCCTCCTGGTGGGAATGCCAACGGCAGTGTGGCTTCAAATGCTTCAAATCCAGCCTCTGTTAGTACCTCACCCGCTGCAGCGATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACTTACCCAATTCCAGCACATGTAGGGGCGCCGCCTGCATATAGAGGAAGCCACGCTCATTCAATGCCGTTTTTCAACGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTCGCAGCTTCAGCAGCAACCGCCACCTCAGTCTCACCCTAATCAACAGGGACCTCAAAATGCTAATACTGCCAATGGTTCCTCATCGTCTCAGAAGAACATGTCTAATCAGCAGCAGAGGCCACATGGGAGCAGTTTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCAACCATCTCAATCACAGCACCCACAGCAGCAGCAAAACCACGCCTCTCATCAAACAAGGCAACATGAGTCTGAAATTGGCGGTGAAGATAGCCCGTCCACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTACGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTATGATGCCTCCTGCATCGATGGTGGCCGCAGGTGGGGCACCTATTGACAAGAAACAGCAGCCTCAACAACAGTCACAGGGTTCAAAAGGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCCAACGGGGCGCCCAATGCTCCTGGGCTTGACCTTTCATCCTTATCACCAAATCATCCTATTTTTCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCCGCTGCCGCCGCTCAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCAGAAGAAGGAAAAACCACACATTCATCGGTTGGGGAGGATGAGAGAAAAAATATGTCTGTTAAGGCACCTCCAACTGTTGGTCAGTCCATTGCCTTCTCTAGAACTGATTTAGCTGAGACATTAATTTCCTCAATGCCAGCTGGGGCTGCTGTTGATAGCTCTGCAAGAACTCTCAAACTTGCACAATCACAAGGACAGCAACCTGCAAGCAGTAATCATCCGCAATCGCCCGGAATGATTGGCTCACCAACTAATTCTTCACTCTCAAAGGGTGCCGGTGGAAGCCCACGGACAGCTACTTCGGGTTCCATGAGTCACAAAGTTGGTCAATCATCTTCTTTATCATCACAGCAGACAAAGCATCCTACATCTATGCCCCCTCAGAAGTTATCTCCTGCTGGTGGGCGAAACGTTACATCAATTCTTGGCAATAATCAAATGACCTCTTCAAGTTCTGGAACTAAATTATCCCAACAGTCGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAGCAACAGCAACAACAGCAACAGCAACATTTGTCGAAGCAATCATTGCAGCAAGCCCAGGTGCTCTTCCCTTATATGCAGGCCCAAGTTTCCCATTCAAGTAGCAGTCCAACTGCTTCACCTTCAAGCGGTTATTATCCAAGGCGTCGTCCTGAGCAGCAATCACAATTGCAGGGCTCAGGAGGAACATCCTCAAATGGAATGCTATCCCTATGCCACCCTGTTACACACGGAGGTAACAGCACTACTGATCCTGCTAAGGCCGTTGCTGCTGCGGCTGCAGGCACAGCCAACAATATGAAAGGCGGTAGCTTATCCACACAAGCCATTCTCCATCCTGCTCAGTTTGCTGCTGCACAGTCCTCCGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTACGTGCATACCGCTGCAGTGCAAGTGAAATCAACAGAGCAGAAACAACCTGCGGGTGGGTAG 4092 49.78 MDRNREARRTTTNMAASNGLSRRRYRTSSLRDSPDGGEDSSEESVNDEEDEEDDDGGGGGGGGGASVRMLPPNPAAILSHRKTFPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAATGGGTVIEAINRQASTSPVRPSLTAMAATFQPPASPSSSNAPVRKKLKQTGPKLRPLKSSSKPSSTAQDEIEIEIAEVLYGMMRQPQGPPKQEPSTTDSMKFDSKSTTDAKSRVSSPISNSSDLPTPSILPQNSSSSVTPISTTAPKRKRPRPVKYDDENTATFSLRNSPISSRAKAEADQPPTNAEIPSSNVDKVSGSAGENVVSNESANSLALPESRPESMKVDATSAMPNSKPLTEESDGKDLGSSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDAENQRDDKYKIDLMAPPPLRASPEREGEIDFVAVDAKPMVIDADTEMKPLINEDDKGTIRLGGAKEALNVESKAIPAEEADSKNPIACKDRNFDLQLDLVKTIDRDGPNKLHQHVQKQLPQPSSEKAGSAVQAGSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPAAAMQPPNFLFPQPRPKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGAKHGNLSIVPSTDLQGNLPKSGVNAMQDKGQSLGMFTGHAGKDRGSQAVNVVDASQRKQILLQQALPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPGGNANGSVASNASNPASVSTSPAAAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGSHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGPQNANTANGSSSSQKNMSNQQQRPHGSSFSGNFQGFPASRNQPSQSQHPQQQQNHASHQTRQHESEIGGEDSPSTADSRVNLANLSVYGPNFPMPMHTPNFAMMPPASMVAAGGAPIDKKQQPQQQSQGSKGLEQSQTIPLSFAPNGAPNAPGLDLSSLSPNHPIFQSLPEITRQGYHQIMAAAAAQVAQQKKNYRVAEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRTDLAETLISSMPAGAAVDSSARTLKLAQSQGQQPASSNHPQSPGMIGSPTNSSLSKGAGGSPRTATSGSMSHKVGQSSSLSSQQTKHPTSMPPQKLSPAGGRNVTSILGNNQMTSSSSGTKLSQQSQQQQQQQQQQQQQQQQQQQHLSKQSLQQAQVLFPYMQAQVSHSSSSPTASPSSGYYPRRRPEQQSQLQGSGGTSSNGMLSLCHPVTHGGNSTTDPAKAVAAAAAGTANNMKGGSLSTQAILHPAQFAAAQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1320520 1327037 - Cp4.1LG12g02090.1 Cpe12g00204 478201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 152 436 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1237 1292 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 960 985 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 152 171 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1038 1058 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1237 1293 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1 95 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1094 1203 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 215 270 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 287 342 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 10 24 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 39 57 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 822 918 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 727 758 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 822 899 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 180 194 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 519 541 - -
Cpe12g00204 1363 PANTHER PROTEIN TIME FOR COFFEE 1 1111 IPR039317 GO:0042752
Cpe12g00204 1363 PANTHER PROTEIN TIME FOR COFFEE 1102 1362 IPR039317 GO:0042752
Cpe12g00204 1363 PANTHER PROTEIN TIME FOR COFFEE 1 1111 - -
Cpe12g00204 1363 PANTHER PROTEIN TIME FOR COFFEE 1102 1362 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 738 758 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 953 1000 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1095 1165 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 364 378 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1172 1203 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 1038 1061 - -
Cpe12g00204 1363 Coils Coil 1195 1217 - -
Cpe12g00204 1363 MobiDBLite consensus disorder prediction 523 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00204 - - - cpep:111807464 1922.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00204 Cpe17g00142 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00204 Cpe-Chr12:1320520 Cpe12g01025 Cpe-Chr12:8561365 2.04E-91 wgd
Cpe12g00204 Cpe-Chr12:1320520 Cpe17g00142 Cpe-Chr17:887695 6.16E-87 wgd
Cpe12g00204 Cpe-Chr12:1320520 Cpe17g00851 Cpe-Chr17:6612965 1.23E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00204 Cpe_Chr12 FPKM 12.801887 17.090752 7.356091 6.148733 18.033045 20.928967 15.51133 5.82013 5.27428 5.86229