Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00206 CGATTGAACGCAAGGATTCAGCCATCCACAGACATACTTGAATCCCCAAGTTCTTCAGCTTCAATCTCCTTTATAAGGATCCTGATTCGCGATTTTCAGGGGACCATGCTTTCGAATCAGCTGCAGAATGGGATGGATAGAGCAAAAAGCATGTGGTCTCGTCTTCCGGACACCGATGAAAATGAGGACGACCTCGTTAGCTTCTTGAAGAAGAACGATGGGGGCGGCGTCGAAAGCCTTGATTACGAGGTCATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGAAGATTATTTGTTGGCTATAGTGTGGTGGTTAAGTGGCTGTATGCTTTGTTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCAGGCTGGAAATTTTCATTGACATTTGCTCTAATTCAGAAGTCATATGTAGCTGGTTTTATAGTATACTTAGCCATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACTCATTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCTTAATCGGAAAGATATTTGGAAGCATTGGTTCGGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGACCGCTTGTACATACGGGCGCCTGTATTGCTTCTTTGCTAGGACAAGGTGGATCTGGTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTGACATGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAAGTCAACTTTTGTGGCGTGTGTTTTTTACGTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCGATGGGATGGTGTAAGAGTGGGAAGTGTGGCCATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGGGGAGTTGTTGCCTATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACGTATTGGCGACGAAACCATTTGCACAAAAAGGGGAACCGAGTTAAGATCATTGAAGCTTGTCTCATCTCGGTATTAACATCAATTATTTCGTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAATCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCAGGGACGTACGGGAATTATGTCAATTTTTATTGTAGCAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACGATGCATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACGTTTGGTACTGCTGTACCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTCGTGGTTAGTTTCTACAAAAAGCCGAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCGTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTTTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAGTTTTTACCTCTCATAATGCTTGTCCTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTCTATGAAGAGCAAGCCCAGTTGAAGGGTATTCCGTTACTGGAATCGAGACCGAAGTACCAGATGCGGAAAATAACAGCAAAGGAGGCCTGTGGAAAAAGGGTCGTCTCGTTCCCCCGCGTTGTTAAGGTTGCTGATATTGTTAGTATTTTACGGAGCAACAGACATAATGGCTTTCCTGTGATCGATTACTCTCGAAACGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTGTTAGGACTACTGCAGTCCAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATCCAAGAGGATCCATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTAAGACACGCGTTTGTCGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAAGCTCGGCGTCGAGATAGAAGTATACATACAACGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACGCAGACGGCTGATGAACATCATGCAGCAGCTGCCAAGATTAATATGGGGGACGGCAGGGGAGGCCAAGGCAGAGGGCTCTGGGGCAACGGTGGTGGAAGCGAGGCGTTGGACGTTAATGTCGACCTTCTGGCCGGCCTGGCAATGGCCGGGAACACCGCAGAGGAAAAAGTGATGGCCTCTGGTTTGAATGGTGATGGTGTCGTTGCCGGAAGAGTGTGTCTCTATGGGGTC 2694 44.88 RLNARIQPSTDILESPSSSASISFIRILIRDFQGTMLSNQLQNGMDRAKSMWSRLPDTDENEDDLVSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGRLFVGYSVVVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEESQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKSDPDLGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADIVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSMPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTKLGVEIEVYIQRMGMSRAHFLTDFWSITQTADEHHAAAAKINMGDGRGGQGRGLWGNGGGSEALDVNVDLLAGLAMAGNTAEEKVMASGLNGDGVVAGRVCLYGV 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1342957 1350914 - Cp4.1LG12g02100.1 Cpe12g00206 478203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00206 898 Pfam Voltage gated chloride channel 165 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 CDD ClC_6_like 78 601 - -
Cpe12g00206 898 Gene3D - 603 785 IPR046342 -
Cpe12g00206 898 Gene3D Clc chloride channel 103 602 - -
Cpe12g00206 898 Pfam CBS domain 732 778 IPR000644 -
Cpe12g00206 898 PRINTS Chloride channel signature 208 227 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 532 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 272 291 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 497 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 588 602 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 177 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 PRINTS Chloride channel signature 550 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe12g00206 898 SUPERFAMILY Clc chloride channel 87 603 IPR014743 -
Cpe12g00206 898 PRINTS Plant CLC chloride channel signature 83 91 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe12g00206 898 PRINTS Plant CLC chloride channel signature 449 465 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe12g00206 898 PRINTS Plant CLC chloride channel signature 301 311 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe12g00206 898 PRINTS Plant CLC chloride channel signature 319 326 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe12g00206 898 SMART cbs_1 734 782 IPR000644 -
Cpe12g00206 898 SMART cbs_1 621 673 IPR000644 -
Cpe12g00206 898 CDD CBS_pair_voltage-gated_CLC_euk_bac 622 778 - -
Cpe12g00206 898 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 39 798 - -
Cpe12g00206 898 SUPERFAMILY CBS-domain pair 606 778 IPR046342 -
Cpe12g00206 898 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 39 798 - -
Cpe12g00206 898 ProSiteProfiles CBS domain profile. 731 787 IPR000644 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00206 Cpe-Chr12:1342957 Cpe13g01120 Cpe-Chr13:8983128 0 dispersed
Cpe12g00206 Cpe-Chr12:1342957 Cpe01g00804 Cpe-Chr1:4797320 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00206 K05016 - csv:101215989 1427.54