Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00208 ATGGAGACGATGGGGAAACGAACGACGAAAAGTTCGAGATCGCAAACGTTACCTTCATCGCCGTCGCATTCTATCTCTTCCTCTTCATCATCCGATTTCGAATTCACTATCTCTGTTTCACCTCATCAAGCCTCCACCGCGCTCTGTCCCGCCGATGAGCTCTTCTACAAAGGCCAGTTGCTTCCTCTCCATCTCTCCCCTCGCCTCTCCATGGTCAGGACGCTCATTCTCGCTTCCTCCAGAACGTCGTCGTCGTCTTCCGAAACCAACAGCACCACCGCGTCGCGCGATTCCACCGAATCTCACTCCTCCTTCAACAGCGGCATTCTTCTTTTCGCCGATTGCGATTCCTCTAGACCTAGCTCCGTCACTGAGGACGACGAAAAAGAATCGACGAAAAACAATCCAGAGCCTCAAATTGTATCCGGATCGCACATCAAGAAAATTAGCTCCTCCGCGAAGGAAGTTTTCAGGAAGTATTTGAAGAAAGTCAATCCGTTATACGGAAAAAATTCACAAAAGCAGCAACAGCAACAGGAATGGACGACGAAAACAGATAGATCTAGTAAAGAGGACAAACCATCAAACATTGAATTTTCAGGCAGCAACTCCGGAAAAGAAAGCGGATCGAGAGCAGTACCGCACTCATTTTCCGGTAATTTGAGATATCCGAGAATAAGAACCATAGCCTCGAGTTGTCCGTCATCGATTAGGTCATCGCCGAGCCACTCCGGGATCCTATCGTCTCGGAATATGTATTCGAGTAGTAGGACGAATTACGGCAACGCGTCCTCAACGGAGGAGTTGCAGAGCGCGATTCAAAGTGCAATCGCTCACTGCAAAAACTCCATGGTCCAAAGCAAAGGGCGCCAATGA 876 48.97 METMGKRTTKSSRSQTLPSSPSHSISSSSSSDFEFTISVSPHQASTALCPADELFYKGQLLPLHLSPRLSMVRTLILASSRTSSSSSETNSTTASRDSTESHSSFNSGILLFADCDSSRPSSVTEDDEKESTKNNPEPQIVSGSHIKKISSSAKEVFRKYLKKVNPLYGKNSQKQQQQQEWTTKTDRSSKEDKPSNIEFSGSNSGKESGSRAVPHSFSGNLRYPRIRTIASSCPSSIRSSPSHSGILSSRNMYSSSRTNYGNASSTEELQSAIQSAIAHCKNSMVQSKGRQ 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1361176 1363002 + Cp4.1LG12g02010.1 Cpe12g00208 478205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00208 291 MobiDBLite consensus disorder prediction 167 219 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 1 30 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 120 134 - -
Cpe12g00208 291 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 4-RELATED 4 136 IPR039620 GO:0005886|GO:0019210
Cpe12g00208 291 MobiDBLite consensus disorder prediction 232 271 - -
Cpe12g00208 291 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 1-RELATED 4 136 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 8 30 - -
Cpe12g00208 291 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 4-RELATED 137 288 IPR039620 GO:0005886|GO:0019210
Cpe12g00208 291 MobiDBLite consensus disorder prediction 168 183 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 116 146 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 80 103 - -
Cpe12g00208 291 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 1-RELATED 137 288 - -
Cpe12g00208 291 MobiDBLite consensus disorder prediction 195 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00208 - - - cpep:111807333 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00141 Cpe-Chr3:713162 Cpe12g00208 Cpe-Chr12:1361176 1.88E-10 dispersed
Cpe12g00208 Cpe-Chr12:1361176 Cpe02g00173 Cpe-Chr2:885802 2.89E-08 dispersed
Cpe12g00208 Cpe-Chr12:1361176 Cpe17g00139 Cpe-Chr17:868741 2.09E-115 wgd
Cpe12g00208 Cpe-Chr12:1361176 Cpe08g00252 Cpe-Chr8:1652904 8.31E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g466 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00565 Cam06g0605 Cec06g0605 Cco06g0610 Clacu06g0591 Cmu06g0586 Cre06g1352 . Cone15ag0822 . Cone4ag0228 . . . . . . . Bda13g00133 . . . . . . . . . . . Cpe12g00208 . Bhi12g01826 . . Lac12g1767 . . . . . . . . . . Lsi09g01336 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002276 3 2 2 1 3 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00208 Cpe_Chr12 FPKM 0.0 0.014304 0.152315 0.532155 0.253687 0.0 0.0 0.424239 0.267588 1.210337