Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00211 ATGAATATGGCGCATTTCGACACCGACCTCCCTCCTCTCGACCACCTTCACTCCACCAGATCCCTCATCTCTGCTCTCAATTTACTCTCCCGGAATCTCCCTCTTCCTCCCGACCTCTTTGAAGCTGTTTCTTCCATTTACTCCGCTCCTCCGGATCAAGATCCCGCTGCTCTCAGTGATTCGGATGAGCTTGGAGATTCTGTTCAAGAAGATCTATTGAGTGACCTTGGAGATGCTTTGGCTAAGCAACGTTCAAATTTTGAATCTGGTTCTGGGTTGGAACAATTGAGAGAAGAACGTTATCGAGGTCAAATACAATGGCGGTTGAATGATCTAGAAGAATTACCTTCAAGTAGAGGGGAAGACTTACAGACGAAGTGCTTGCTTGAACTGTATGGATTAAAGTTACTAGATTTGCAAAAAAAGGTACGATCTGATGTGAGTTCAGAGTACTGGCTTCAAGCAACTTGTGCATACCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGTGTAGGAGATGCTTTTGCCATGGAAGCTGATGATCAACTGCGAAAGAAGCGGGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAAAACCAAATCGAAACTAGGAAAAGAAAGTTTTTTGCTGAGATACTAAATGCTGTTCGTGAATTCCATTTACAAATTCAAGCTTCTGTAAAACGTCGGAAACAGAGAAATGACGGAGTTCAGGCATGGCATGGAAGACAAAGACAACGTGCTACCAGGGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCTGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGACCTTGGATGAATCGGATGTTGATTTACAGGAATTGGATTCTTCAAAGAATGCAACCCCTCAAGAACTACTCATGGATGAAGATTTAGACGCCACTGATTCTGACCGCAATTATGAAAGTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATGCAATTCAGGAAAAGGTCACTGAGCAGCCTTCCATGCTACAAGGAGGAGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGACTCGGAAAAACTATACAAACGATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCTGTACTTCCAAACTGGATTCATGAATTTACAACATGGGCCCCGAGTATCGCTGCTGTTCTTTACGATGGGCGTCAGGAGGAGAGAAAGGCTATAAAGGAGGAGCTATTGAGTGAAGGAAAATTTAGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTGAAAAATCGTGATTGTGCTCTTGCACAAACACTTGCAGGGCCATTCATATTGAGGCGAAAAAAGGACGAGGTGGAAAAGTATCTACCTGAAAAGTCACAAGTCATACTAAAATGTGATATGTCAGAATGGCAGAAAGTATACTATCAACAAGTAACTTCTATTGGCAGAGTTGACACGGGTTCTGGCAAATCGAAGTCCCTACAAAATTTAACGATGCAGCTGAGAAAGTGTTGTAATCATCCATATCTTTTTGTTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCGTCAGAGCTTCTGGGAAATTTGAACTACTTGATCGTCTGCTCCCGAAGCTACATAGAACTGGGCATAGAGTCCTGCTTTTCTCCCAAATGACTCGTCTTATGGACGTTCTTGAAATTTATCTTCAACTCCATGAGTTTAGATATCTCCGACTTGATGGTTCGACAAAAACTGAAGAAAGAGGGTCTCTAGTGAAGCAATTTAATGCTCCGGACTCCCCGTTTTTCATGTTTCTCTTGAGTACTCGTGCGGGTGGTTTAGGTTTGAACTTACAGACTGCAGATACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAACAGGCAGAGGATCGAGCTCACCGTATCGGACAAAAGAAGGAAGTAAGGGTGTTTGTTCTGGTTAGTGTTGGATCAGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATTGATGCCAAGGTTATCCAAGCTGGACTTTTCAACACAACTTCAACAGCTCAAGACCGAAGAGAGATGTTGGAGGAGATTATGCGCAGAGGAACGAGTGCACTTGGCACTGACGTGCCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTCTGGCTTTTCGAGAAAATGGACGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTGATGGAAGAACACGAGGTACCTGAGTGGGTATACTCGGTACCCGACGGTAACGAAGAGAAGAACAAGGGTTCGGAAATTCTCAGTGTCGCTGGAAAACGAAGAAGAAAGGAGGTGGTTTATGCTGATACACTGAGTGATTTGCAGTGGATGAAAGCTGTGGAGAATGGAGAAATTCCAAACCTTTCTATGAAAGCAAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGTATCAACCAGCAATATTGTCAGCTCAAGAGCAGAGGATAAGCTGATAGAATACGATGATAACGTGCCTGTAACGAGCGAGGGAACAAGCGAAGACAATTCAGGTTTAGAACCAACCCCAAAGAGACAAAAGTCCGAAGGGGGGGTAAGTATTAGAAAACACGAAATCTTGGCCGAATCAGGAAGCGAATGGAGTCGATGCGTAATAACATGGAAAACACACAAGAAGAAGCGATCGAGCTATGTCCAAGGCTCCACAGATTCTAGACATAACTCCAATGGAAGAGGAAACGGATGGGCTTGA 3072 42.84 MNMAHFDTDLPPLDHLHSTRSLISALNLLSRNLPLPPDLFEAVSSIYSAPPDQDPAALSDSDELGDSVQEDLLSDLGDALAKQRSNFESGSGLEQLREERYRGQIQWRLNDLEELPSSRGEDLQTKCLLELYGLKLLDLQKKVRSDVSSEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAMEADDQLRKKRDAERTSRLEEEEKNQIETRKRKFFAEILNAVREFHLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLQELDSSKNATPQELLMDEDLDATDSDRNYESGDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFSVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRDCALAQTLAGPFILRRKKDEVEKYLPEKSQVILKCDMSEWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFVLGDYNIWRKEEIVRASGKFELLDRLLPKLHRTGHRVLLFSQMTRLMDVLEIYLQLHEFRYLRLDGSTKTEERGSLVKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDGNEEKNKGSEILSVAGKRRRKEVVYADTLSDLQWMKAVENGEIPNLSMKANRRETPSREGSVSTSNIVSSRAEDKLIEYDDNVPVTSEGTSEDNSGLEPTPKRQKSEGGVSIRKHEILAESGSEWSRCVITWKTHKKKRSSYVQGSTDSRHNSNGRGNGWA 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1377213 1384191 - Cp4.1LG12g02070.1 Cpe12g00211 478208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00211 1023 SMART helicmild6 658 742 IPR001650 -
Cpe12g00211 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 562 IPR014001 -
Cpe12g00211 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 537 IPR027417 -
Cpe12g00211 1023 SMART ultradead3 389 573 IPR014001 -
Cpe12g00211 1023 PANTHER SNF2/RAD54 HELICASE FAMILY 539 964 - -
Cpe12g00211 1023 Gene3D - 363 539 IPR038718 -
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 328 360 - -
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 996 1023 - -
Cpe12g00211 1023 Coils Coil 187 214 - -
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 908 984 - -
Cpe12g00211 1023 PANTHER ATP-DEPENDENT HELICASE BRM 539 964 - -
Cpe12g00211 1023 Pfam Helicase conserved C-terminal domain 629 742 IPR001650 -
Cpe12g00211 1023 PANTHER SNF2/RAD54 HELICASE FAMILY 15 537 - -
Cpe12g00211 1023 Pfam Snf2-ATP coupling, chromatin remodelling complex 836 897 IPR029295 GO:0042393
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 969 983 - -
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 919 933 - -
Cpe12g00211 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 632 799 IPR001650 -
Cpe12g00211 1023 PANTHER ATP-DEPENDENT HELICASE BRM 15 537 - -
Cpe12g00211 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 796 IPR027417 -
Cpe12g00211 1023 MobiDBLite consensus disorder prediction 1007 1023 - -
Cpe12g00211 1023 Gene3D - 551 849 IPR027417 -
Cpe12g00211 1023 Pfam SNF2-related domain 396 537 IPR000330 GO:0005524|GO:0140658
Cpe12g00211 1023 SMART SnAC_2 835 897 IPR029295 GO:0042393
Cpe12g00211 1023 CDD SF2_C_SNF 620 753 - -
Cpe12g00211 1023 Coils Coil 833 853 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00211 - - - csv:101222943 972.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00211 Cpe17g00136 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00211 Cpe-Chr12:1377213 Cpe19g01203 Cpe-Chr19:8078742 1.42E-75 dispersed
Cpe12g00211 Cpe-Chr12:1377213 Cpe17g00136 Cpe-Chr17:847062 5.21E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50298 PF00176 SNF2_N 2.60E-31 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00211 Cpe_Chr12 FPKM 0.0 0.0 1.679802 2.186603 0.0 0.0 0.0 0.101361 0.181215 0.0