Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00214 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCGCCCGACGGTGACGACGGTGGGAAGTTCGGTGGCCTCGTCGAGAGGATTGGCTCCAGCATTCGAAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTTTGCCACCGGTTGCGAAAGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTATTGCAATCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAAGCTCACATCCGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAATCTTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGGTCTTTCCCTGAGTCTGTTATGAAGACCTACACGAAGCAGCTATTATTGGGACTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGCATTAAACTTGCTGATTTTGGTGCATCCAAGAAAGTAGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACGGGGAAACCTCCATGGAGCCAACAGTACCAAGAGGTTGCTGCTCTTTTCCACATAGGGAATACTAAGTCCCATCCACCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTACAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTCATGCAGCAGTCCGTGCCTCCTCTTTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAATTCTAATGATATAACAAAGTCTATAATCCAACGTTCAACCTGTGAGGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGAGGTACGGTCCAACTGGGGATCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCGATAAAGTACAAATCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAGCTGAGAGGCAATTTAATGGAATTGTCTGGTATTCAAACTGGCCAGGAATCTACTAGCAAGGGAAATGACTTCACTTTTCCATGTGGTCAATCAACAGCTGAGGATGACGAAGAGGTTACAGACTCGAAGATTCAAGCCTTCCTGGATGAAAAGGCTTTGGAACTGAAGAAGCTACAAACACCTTTATATGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCTTTAGGAGCAGGTGGCACTGAGAATAGCAAGAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAAATTGGGGAATGGAACAAATTGCTTCATACACAGCCAGAGTCTTGCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAGCGAGAAATGATGCGGCGCGGAACTGTAGGAGCAATTCACTAA 1938 44.01 MQDFFGSVRRSLVFLAPDGDDGGKFGGLVERIGSSIRKSRNGLFSKHSVRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELIAIKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREESSLNILLEFVPGGSISSLLGKFGSFPESVMKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPHAAVRASSLESGKQMADSRLNSNDITKSIIQRSTCEGLKDICEMGSLRCSSVFSGNYEVRSNWGSSNFEDDMCQIDDKDLFASSSIKYKSIISSNDLNKSFNPMCEPTDDWACKLDESSELRGNLMELSGIQTGQESTSKGNDFTFPCGQSTAEDDEEVTDSKIQAFLDEKALELKKLQTPLYEEFRSTVNAANALGAGGTENSKSVSNFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQASILQDRALQEIQSPQIGEWNKLLHTQPESCTPSFSERQRKWKEELEEELKRKREMMRRGTVGAIH 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1402800 1408922 - Cp4.1LG12g02240.1 Cpe12g00214 478211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00214 645 CDD STKc_MAPKKK 65 327 - -
Cpe12g00214 645 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00214 645 Gene3D Transferase(Phosphotransferase) domain 1 65 366 - -
Cpe12g00214 645 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cpe12g00214 645 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Cpe12g00214 645 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00214 645 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 47 554 - -
Cpe12g00214 645 PANTHER MAP KINASE KINASE KINASE 47 554 - -
Cpe12g00214 645 Coils Coil 98 125 - -
Cpe12g00214 645 Coils Coil 615 638 - -
Cpe12g00214 645 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00214 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01551 Cpe-Chr2:13156043 Cpe12g00214 Cpe-Chr12:1402800 2.21E-22 dispersed
Cpe03g00830 Cpe-Chr3:5199118 Cpe12g00214 Cpe-Chr12:1402800 7.37E-40 dispersed
Cpe07g00907 Cpe-Chr7:8123321 Cpe12g00214 Cpe-Chr12:1402800 0 dispersed
Cpe12g00214 Cpe-Chr12:1402800 Cpe10g00335 Cpe-Chr10:1945120 2.19E-89 dispersed
Cpe12g00214 Cpe-Chr12:1402800 Cpe11g00936 Cpe-Chr11:7917148 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62744 PF00069 Pkinase 3.00E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00214 - K20606 csv:101217427 1153.27