Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00227 ATGTCCTGCTTGTTTTCGTGCTGTGCATCTCTCACATGCGGTCTCTGCTCCTCTGTTGCTTCCGGAATCTCCAGAAGCTCCGCTAGACTTGCTTATTGTGGCCTTTTCGGCGTCTCCTTGGTCACTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATGTCATGGATAAAAACTGAGGCACAACCAGAGGAATGGTTTCAAATGCAAGCAGTTCTTCGTGTGAGCTTAGGAAATTTCTTGTTTTTTGCTATATTTGCCCTCATAATGATTGGTGTAAAAGACCAAAACGACAGACGTGATGCATGGCATCATGGAGGATGGATGGCTAAGATGGTGATCTGGATTTTGTTAGTCGTCCTCATGTTTTTCCTTCCAAATGTTGTCTTCTCAATATATGGAGTTCTATCCATATTTGGGGCTGGGTTGTTTTTATTGGTTCAAGTGATTCTCTTACTTGACTTTACACACTCGTGGAATGACTCCTGGGTCGAGAAGGATGAACGGAAATGGTATATTGCTCTTCTTGTGGTATCAATTGGTTGCTACCTTGCCGCATTCGCTATCCCGGGACTTTTGTTTATTTGGTTCAATCCCTCAGGCCATGACTGTGGCCTCAATGTCTTCTTCCTAGTCATGACCATGATTCTTGCATTTGTATTTGCTGTAATTGCTTTGCACCCAGCGGTAAATGGAAGTCTATTGCCTGCTTCTGTGATATCAGTTTACTGCGCATATGTGTGCTATACTGGTCTTTCTAGTGAACCACGTGACTACGTGTGCAATGGTCTTCATACAAAATCTAAAGCAGTCTCCGTTGGTACCCTTGTCCTTGGAATGCTCACAACCGTCCTCTCTGTTATTTATTCTGCTCTTCGTGCTGGATCTTCGACAACATTTCTTTCTCCCCCATCTTCACCAAGAGCAGGTGGGAGTAAACCTCTTCTTGAAGCAGAAGACTTGGAGGATGGAAAGAACAAAAAAACAGGAGAGGGACAGCCTGTCAGTTACTCCTATACATTCTTCCACCTCATATTTGCTCTTGCAAGCATGTACTCAGCCATGCTACTTTCAGGCTGGACTAGCCTGAACGAGAGCTCGGACCTCATAGACGTTGGCTGGACGTCAGTTTGGGTACGTATTGGCACAGAGTGGGTCACTGCTGCTCTATATATTTGGTCACTCATCGCCCCTCTCCTTCTCCCCGATCGCGAGTTCTTTTAG 1233 45.34 MSCLFSCCASLTCGLCSSVASGISRSSARLAYCGLFGVSLVTSWILREFGAPLMEKMSWIKTEAQPEEWFQMQAVLRVSLGNFLFFAIFALIMIGVKDQNDRRDAWHHGGWMAKMVIWILLVVLMFFLPNVVFSIYGVLSIFGAGLFLLVQVILLLDFTHSWNDSWVEKDERKWYIALLVVSIGCYLAAFAIPGLLFIWFNPSGHDCGLNVFFLVMTMILAFVFAVIALHPAVNGSLLPASVISVYCAYVCYTGLSSEPRDYVCNGLHTKSKAVSVGTLVLGMLTTVLSVIYSALRAGSSTTFLSPPSSPRAGGSKPLLEAEDLEDGKNKKTGEGQPVSYSYTFFHLIFALASMYSAMLLSGWTSLNESSDLIDVGWTSVWVRIGTEWVTAALYIWSLIAPLLLPDREFF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1507784 1512979 + Cp4.1LG12g02270.1 Cpe12g00227 478224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00227 410 MobiDBLite consensus disorder prediction 318 332 - -
Cpe12g00227 410 PANTHER SERINE INCORPORATOR 2 409 IPR005016 GO:0016020
Cpe12g00227 410 MobiDBLite consensus disorder prediction 300 332 - -
Cpe12g00227 410 PANTHER BNAANNG35710D PROTEIN 2 409 - -
Cpe12g00227 410 Pfam Serine incorporator (Serinc) 6 407 IPR005016 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00227 K23544 SERINC1; serine incorporator 1 - csv:101215629 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00373 Cpe-Chr8:2320647 Cpe12g00227 Cpe-Chr12:1507784 1.61E-35 dispersed
Cpe11g01104 Cpe-Chr11:9202884 Cpe12g00227 Cpe-Chr12:1507784 5.38E-61 dispersed
Cpe12g00227 Cpe-Chr12:1507784 Cpe12g00781 Cpe-Chr12:7064317 7.85E-109 dispersed
Cpe12g00227 Cpe-Chr12:1507784 Cpe17g00639 Cpe-Chr17:5207361 1.37E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g424 . . . . . . . . . Cmo17g00261 . . . . . . . . . . . . . . Cla06g00542 Cam06g0584 Cec06g0581 Cco06g0589 Clacu06g0570 Cmu06g0564 Cre06g1332 . . Cone7ag0210 Cone4ag0200 . . Chy11g01434 . . Blo07g00203 Bda11g00557 . . Bpe13g00626 . Bma06g01536 . . . . Cma17g00274 . Car17g00249 Cpe12g00227 . Bhi12g01795 . . . . . . . . . . . . . . . . Cme11g01939
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002145 3 2 3 3 2 1 3 2 1 2 2 1 3 2 2 2 1 3 3 2 2 2 2 2 2 1 2 3 3 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00227 Cpe_Chr12 FPKM 1.147705 0.0 0.470766 0.0 0.486487 0.0 0.0 6.412255 9.469481 9.799281