Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00228 ATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAATGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAACCACTCTCCTCCGTGGCGCGTGTTAAATACTCAATCAGACGGCCCACAATCTCCGGTCCGTCACCACCACTTCGCTAATATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAG 1461 49.49 MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYPNHSPPWRVLNTQSDGPQSPVRHHHFANIPYFSQTVNSIIAKLSLGSLYNMRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1513989 1517928 + Cp4.1LG12g02300.1 Cpe12g00228 478225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00228 487 MobiDBLite consensus disorder prediction 8 35 - -
Cpe12g00228 487 MobiDBLite consensus disorder prediction 1 35 - -
Cpe12g00228 487 PANTHER OS05G0393200 PROTEIN 1 219 IPR044196 -
Cpe12g00228 487 PANTHER OS05G0393200 PROTEIN 277 487 IPR044196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00228 - - - csv:101216598 400.208
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00228 Cpe17g00122 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02397 Cpe-Chr1:20007562 Cpe12g00228 Cpe-Chr12:1513989 4.18E-24 dispersed
Cpe12g00228 Cpe-Chr12:1513989 Cpe13g00952 Cpe-Chr13:7985733 1.27E-28 dispersed
Cpe12g00228 Cpe-Chr12:1513989 Cpe17g00122 Cpe-Chr17:762971 2.96E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g423 . . . Bda08g00389 Bpe04g01190 . Bma04g01182 Bma05g00942 Cmo08g01145 Cmo17g00262 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01435 . . . . . Bpe05g00753 . . . . . . Cma08g01173 Cma17g00275 Car08g01050 Car17g00250 Cpe12g00228 Cpe17g00122 Bhi12g01794 . . . . . . . . . . . . . Lsi09g01361 . . Cme11g01941
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004677 2 2 2 2 2 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00228 Cpe_Chr12 FPKM 2.087927 2.112571 1.689692 2.050143 0.801716 0.666346 0.682409 13.89601 13.606325 15.105927