Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00229 ATGGAAATGGAAATGGAAATGGAAACCAAACTTACTGCAAATAAAACCACAGACTATGATAGTTATATCTCCTGCTCCATCTTACCTTCAGGCAAATGCTTGGATTACGAGCTCTCCTTGGTCTCAGCCTTGAAGTCCTGCGCATCCAGTTCAGCTATTTTTCAAGGGCAGCAAATCCATGCCGCCGTCCTCAAATCTGGGTTTGATTCCAATACTTTCATCCTTAATAGCTTGATTAATATGTATGCCAAATGTGGACATATTGCCGATGCCAGATTGTTGTTTGATTCGTGTTCTGGCCTGGATTCTGTATCTTGTAACATCATGTTATCTGGGTATGTTAAACTTCGCCAATTGGAGAACGCACGCCAGCTGTTCGACAAAATGCCTGAAAGAGGATGCGTCTCTTACACCACCATGATTTTGGGTTTGGCACAGAATGATTGTTGGAGGGAAGCAATTGAGATTTTCAAGGATATGAGGTCTGCAGGTGTGGCCCCAAATGAAGTGACAATTGCAAGTGTCATGTCAGCATGTTCACATATTGGTGGGATTTGGAATTGCTTGATGCTCCATGCACTGGTAATAAAGCTACATTTCATTGGTCTTGTTCTTATTTCCACAAATTTGCTGCACATGTATTGTGTTTGTTCAAGTTTAAAAGATGCTAGGAGGTTATTCAATGAGATGCCAGTGCGTAATACTGTTTCATGGAATGTGATGTTAAAAGGGTATGTAAAATCAGACCTTGTTGATAAAGCAATAGAGTTGTTTGATAGGATTCCAGAAAGAGATGTGATTTCTTGGGCTACAATGATTGATGGGTTTGTGCGAGTGAAACAATTAAGGGAAGCTTTGTTGATGTTTTCTGCAATGAGAAAAAGTGATCTTCATCCCAATGAAGTGATGATTGTTGATTTGCTTTCTGCTTGTGGGCAGTCAATTTCAATTGATGAGGGCAGGCAGCTCCATTCAATCATAGTGAAAACTGGTTTTGATTGTTATGATTTCATGCAAGCAACTCTCATTAGTTTCTATTCAGCTTGTGGAAGGATTGAGCTTGCTTATTTGCAGTACCAGGTAAGTGATAAGAGTCATCTAGCAACTTCAAATGCCCTCATTGTGGGCTTCATGAAGAACAGAATGATTGATCAAGCAAGGCAAATATTTGATGTGATGCCTGAAAAAGATGTGTTTTCATGGAGCACCATGATTTCTGGTTATGCACAGAATGAGTTACCTGATATGGCTTTAGAGCTTTTCCATGGAATGGTGACTGACTTGGAAGAAAGCTATAGTACAACTAATTCTAACTCTTAG 1320 39.85 MEMEMEMETKLTANKTTDYDSYISCSILPSGKCLDYELSLVSALKSCASSSAIFQGQQIHAAVLKSGFDSNTFILNSLINMYAKCGHIADARLLFDSCSGLDSVSCNIMLSGYVKLRQLENARQLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVTIASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMPVRNTVSWNVMLKGYVKSDLVDKAIELFDRIPERDVISWATMIDGFVRVKQLREALLMFSAMRKSDLHPNEVMIVDLLSACGQSISIDEGRQLHSIIVKTGFDCYDFMQATLISFYSACGRIELAYLQYQVSDKSHLATSNALIVGFMKNRMIDQARQIFDVMPEKDVFSWSTMISGYAQNELPDMALELFHGMVTDLEESYSTTNSNS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1521226 1524754 + Cp4.1LG12g02310.1 Cpe12g00229 478226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 236 266 IPR002885 -
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 104 135 IPR002885 -
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 399 425 IPR002885 -
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 135 169 IPR002885 -
Cpe12g00229 439 TIGRFAM PPR: pentatricopeptide repeat domain 371 398 IPR002885 -
Cpe12g00229 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 264 IPR002885 -
Cpe12g00229 439 Gene3D Tetratricopeptide repeat domain 133 192 IPR011990 GO:0005515
Cpe12g00229 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cpe12g00229 439 PANTHER - 89 242 - -
Cpe12g00229 439 PANTHER - 160 282 - -
Cpe12g00229 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Cpe12g00229 439 Gene3D Tetratricopeptide repeat domain 204 364 IPR011990 GO:0005515
Cpe12g00229 439 Gene3D Tetratricopeptide repeat domain 36 132 IPR011990 GO:0005515
Cpe12g00229 439 Pfam PPR repeat family 135 180 IPR002885 -
Cpe12g00229 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 427 IPR002885 -
Cpe12g00229 439 PANTHER - 160 282 - -
Cpe12g00229 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 167 IPR002885 -
Cpe12g00229 439 PANTHER - 221 356 - -
Cpe12g00229 439 PANTHER - 366 427 - -
Cpe12g00229 439 PANTHER - 39 113 - -
Cpe12g00229 439 PANTHER - 89 242 - -
Cpe12g00229 439 PANTHER - 221 356 - -
Cpe12g00229 439 Gene3D Tetratricopeptide repeat domain 365 434 IPR011990 GO:0005515
Cpe12g00229 439 Pfam PPR repeat 104 134 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 236 265 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 208 233 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 369 397 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 399 425 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 75 96 IPR002885 -
Cpe12g00229 439 Pfam PPR repeat 267 296 IPR002885 -
Cpe12g00229 439 PANTHER - 39 113 - -
Cpe12g00229 439 PANTHER - 366 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00229 - - - csv:105435822 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00235 Cpe-Chr11:1268342 Cpe12g00229 Cpe-Chr12:1521226 2.98E-22 dispersed
Cpe12g00229 Cpe-Chr12:1521226 Cpe05g00613 Cpe-Chr5:3736727 4.51E-06 dispersed
Cpe17g00122 Cpe-Chr17:762971 Cpe12g00229 Cpe-Chr12:1521226 1.47E-10 dispersed
Cpe09g00246 Cpe-Chr9:1415813 Cpe12g00229 Cpe-Chr12:1521226 4.32E-14 transposed
Cpe15g00525 Cpe-Chr15:6156331 Cpe12g00229 Cpe-Chr12:1521226 2.06E-10 transposed
Cpe17g00620 Cpe-Chr17:5097527 Cpe12g00229 Cpe-Chr12:1521226 1.05E-28 transposed
Cpe19g00235 Cpe-Chr19:1941436 Cpe12g00229 Cpe-Chr12:1521226 2.14E-06 transposed
Cpe12g00229 Cpe-Chr12:1521226 Cpe17g00121 Cpe-Chr17:762364 1.22E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00229 Cpe_Chr12 FPKM 0.378567 0.0 1.412286 0.0 0.0 0.0 0.0 2.471491 2.803346 2.257247