Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00236 ATGCCAACAAATTCCGGTCTGAAATTCCAGCGACGAGAGATTGAAAGTTCATCGTACTCGATGCGTGGCCATGGTTGGATCAATACGGTTCTTCCTGACGAACTAATCGTTGAGATCTTCCGGTGCCTTGACTCGAAGCTGAGTCGAGATGCTTGTTCTCTCGTCTGCAGGCGTTGGCTTAAGCTCGAGCGCCTCAGCCGAACCACTCTGCGAATTGGCGCAACGGATGTCAAAATTTTATTGGGAATGTCTATGCAGGGAAGAAGACGGCGCAATGAAGTCATGCGCTTGCCATTTAAATCACATCATGCAACTCATAATACTGGGACTGAAGGTGCGCCGGAGTCTTCTTGTCTGTCTGATGCTGGGCTAATTGCCCTCTCCATAGGTTTTCCGAACCTTGAGAAACTGAGCTTAATTTGGTGCTCGAATATCTCAAGTCAGGGCTTGACATCCCTGGCTGAGAAGTGCAAATTTTTGAAGTCACTGGATCTACAGGGTTGCTATGTTGGGGATAGAGGTGTAGCTGCAGTTGGGGTATTCTGTAAACTACTCAAAGATGTAAATTTTCGTTTTTGTGAAGGGCTGACTGACGTTGGTTTGGTTGAATTATCCCGTGGCTGTGGGAAATCATTAAAATCATTTGGTATGGCTGCTTGTGCCAAGATAACGGATGTCGCACTAGAAGCTGTAGGCATGCACTGTAAATATCTCGAGTCCATATCGCTAGATTCCGAAGTTATCCATGACAAAGGGGTGCTTTCTCTTGCCCAAGGATGCACACTTCTTAAAGTTTTGAAGCTACAGTGTACAAATGTCACAGACGAAGCTTTGGTAGCTGTAGGCTCCTTGTGTCCTTTTCTGGAACTATTGGCTTTATACAGTTTTCAGGAATTTACAGACAAGGGACTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAGAATCTCACTCTAAGTGATTGTTATTACCTGAGTGATATGGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAATGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGGAAAATCTTGCCCCCAACTCACTGAATTGGCTTTGCTGTATTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAATTGCAAGTTCTTACAAGCTCTCCATTTGGTAGATTGCTCGAAAATTGGAGATGAGGCAATATGCGGTATAGCCAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGACGATGCTATGAGATTGGGAATGCAGGAATTATAGCTGTTGGAGAGAATTGCAATCTCCTCACAGATTTGAGCCTCAGATTTTGTGATAGGGTTGGCGATGAGGCGCTTATTGCCATCGGCAAGGGTTGTTCCCTTCATCAACTGAATGTTAGTGGGTGCCACCGCATTGGTGACGTCGGAATCGCAGCCATTGCTAGAGGTTGTCCCCAATTGAGTTTCTTGGACGTAAGCGTTCTTGAGAACTTGGGAGATATGGCAATGGCTGAGTTAGGAGAAGGCTGCCCCTTGCTTGAGGACGTGGTACTGTCTCACTGTCACCAGATAACCGATGCAGGTATAATGCATTTAGTGAAGGGCTGCTCCATGCTCGAATCGTGTCACATGGTCTATTGTCCCAGCATTACTGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAACATAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACGAAACGACGTGCGGGCTCAGTTATTTCCTACCTTTGCGTGGACCTCTAA 1809 45.99 MPTNSGLKFQRREIESSSYSMRGHGWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATDVKILLGMSMQGRRRRNEVMRLPFKSHHATHNTGTEGAPESSCLSDAGLIALSIGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAAVGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVALEAVGMHCKYLESISLDSEVIHDKGVLSLAQGCTLLKVLKLQCTNVTDEALVAVGSLCPFLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYYLSDMGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCPQLTELALLYCQKIVNSGLLGIGQNCKFLQALHLVDCSKIGDEAICGIAKGCRNLKKLHIRRCYEIGNAGIIAVGENCNLLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDVGIAAIARGCPQLSFLDVSVLENLGDMAMAELGEGCPLLEDVVLSHCHQITDAGIMHLVKGCSMLESCHMVYCPSITAAGVATVVSSCPNIKKILVEKWKVSERTKRRAGSVISYLCVDL 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1578988 1584250 + Cp4.1LG12g02430.1 Cpe12g00236 478233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00236 602 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 182 421 - -
Cpe12g00236 602 SMART LRR_CC_2 285 310 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 544 569 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 260 284 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 389 414 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 518 543 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 209 234 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 415 440 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 131 156 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 467 491 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 157 181 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 337 362 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 492 517 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 363 388 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 235 259 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 182 207 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 311 336 IPR006553 -
Cpe12g00236 602 SMART LRR_CC_2 441 466 IPR006553 -
Cpe12g00236 602 Gene3D Ribonuclease Inhibitor 115 170 IPR032675 -
Cpe12g00236 602 Gene3D Ribonuclease Inhibitor 171 348 IPR032675 -
Cpe12g00236 602 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 182 421 - -
Cpe12g00236 602 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 326 590 - -
Cpe12g00236 602 Gene3D - 27 67 - -
Cpe12g00236 602 Gene3D Ribonuclease Inhibitor 349 602 IPR032675 -
Cpe12g00236 602 SUPERFAMILY F-box domain 29 62 IPR036047 GO:0005515
Cpe12g00236 602 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 117 322 - -
Cpe12g00236 602 SUPERFAMILY RNI-like 335 583 - -
Cpe12g00236 602 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515
Cpe12g00236 602 Pfam Leucine Rich repeat 518 540 IPR001611 GO:0005515
Cpe12g00236 602 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515
Cpe12g00236 602 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Cpe12g00236 602 Pfam Leucine Rich repeat 467 489 IPR001611 GO:0005515
Cpe12g00236 602 Pfam F-box 31 68 IPR041567 -
Cpe12g00236 602 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 117 322 - -
Cpe12g00236 602 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 326 590 - -
Cpe12g00236 602 SUPERFAMILY RNI-like 119 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00236 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1030.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00236 Cpe17g00113 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01156 Cpe-Chr1:6878436 Cpe12g00236 Cpe-Chr12:1578988 8.92E-11 dispersed
Cpe02g00290 Cpe-Chr2:1501554 Cpe12g00236 Cpe-Chr12:1578988 1.63E-08 dispersed
Cpe12g00236 Cpe-Chr12:1578988 Cpe18g00494 Cpe-Chr18:5753249 3.25E-21 dispersed
Cpe12g00764 Cpe-Chr12:6969082 Cpe12g00236 Cpe-Chr12:1578988 2.00E-11 dispersed
Cpe13g00654 Cpe-Chr13:6199654 Cpe12g00236 Cpe-Chr12:1578988 2.48E-18 dispersed
Cpe15g00832 Cpe-Chr15:8231152 Cpe12g00236 Cpe-Chr12:1578988 1.43E-07 dispersed
Cpe16g00151 Cpe-Chr16:3538445 Cpe12g00236 Cpe-Chr12:1578988 7.98E-14 dispersed
Cpe16g00678 Cpe-Chr16:7064956 Cpe12g00236 Cpe-Chr12:1578988 7.37E-06 dispersed
Cpe04g00531 Cpe-Chr4:5772550 Cpe12g00236 Cpe-Chr12:1578988 2.36E-14 transposed
Cpe12g00236 Cpe-Chr12:1578988 Cpe17g00113 Cpe-Chr17:703785 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00236 Cpe_Chr12 FPKM 0.707079 0.342395 0.904906 1.279802 3.530866 2.884837 4.475634 0.179206 0.108099 0.103327