Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00239 ATGGGTTGTATACACACAAAATGTTGCTGTTCCTACCCAAAATCGTTGGTTGGAGAATCCCAAGACTTTCATCAAGAAGATAAGAACACAGTGATCGAAAGATCATTGGAGTTCATTCCTGTTGCTTCCCACAACTATCATTTGGAATACTTGGTGCTGTCTCGGCGTGGGTTCTACCCTGAATCCCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAGTATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAAGCTAATAGAAAAGCTTTGTAATGATCCCAAATTGTTGGATAATCCTGTACAAGCTTATAATTCAGCATTTTTGTGTACAAATGATGAGCTGCATACAAGTGAAATTGATGATTCAATGAGTGGAACAACTGCTATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCCAATGTGGGCGATTCAAGAGCTGTAATTGCAGTTAAGGAAGGGAACCGTGTCCTTGCCAAGGACTTGTCAAACGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTTAGGCTTTGTGGGGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGGCTTATGGATCCTGATATTCAGTGCTGGGGCGATGAAGAGAGCCAGGGCGGTGACCCGCCTCGACTCTGGGTTCAAAATGGTTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGAGATAGTACTGCAGAGAAGATTGGTGTAATTGCTGTTCCTGAGGTTTTAGTTCTTCCGCTTAAGGCTAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCGAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAGGATGCGTGCACTGCCATTGCAGCCAAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATCACGATCATTATTGTTCATATAAAAGGCTTGTCTAATGTATGA 1038 41.52 MGCIHTKCCCSYPKSLVGESQDFHQEDKNTVIERSLEFIPVASHNYHLEYLVLSRRGFYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDKLIEKLCNDPKLLDNPVQAYNSAFLCTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNRVLAKDLSNDQTPFRKDEYERVRLCGARVLSVDQVEGLMDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVIAVPEVLVLPLKANHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAKSYKLWMEHENRTDDITIIIVHIKGLSNV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1606039 1608027 + Cp4.1LG12g02370.1 Cpe12g00239 478236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00239 345 Gene3D - 42 341 IPR036457 -
Cpe12g00239 345 SUPERFAMILY PP2C-like 41 341 IPR036457 -
Cpe12g00239 345 SMART PP2C_4 52 337 IPR001932 -
Cpe12g00239 345 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Cpe12g00239 345 CDD PP2Cc 65 339 IPR001932 -
Cpe12g00239 345 Pfam Protein phosphatase 2C 78 317 IPR001932 -
Cpe12g00239 345 ProSiteProfiles PPM-type phosphatase domain profile. 49 339 IPR001932 -
Cpe12g00239 345 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 344 - -
Cpe12g00239 345 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 344 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01405 Cpe12g00239 CCT
Cpe12g00239 Cpe17g00110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01700 Cpe-Chr2:13968874 Cpe12g00239 Cpe-Chr12:1606039 1.77E-179 dispersed
Cpe04g01110 Cpe-Chr4:9625043 Cpe12g00239 Cpe-Chr12:1606039 2.96E-132 dispersed
Cpe12g00239 Cpe-Chr12:1606039 Cpe18g00410 Cpe-Chr18:5284713 1.22E-141 dispersed
Cpe12g00239 Cpe-Chr12:1606039 Cpe17g00110 Cpe-Chr17:676117 0 wgd
Cpe12g00239 Cpe-Chr12:1606039 Cpe03g01405 Cpe-Chr3:11329796 1.19E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00239 - - csv:101217134 655.21