Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00249 ATGGCTCTCTGTACGCTAACGTTTCCTGCTCATGTCGGCCGAGTTGCAGCGAAAGAACACGATGGTTCTCGGTTCTTATCGGGGACGGATCTGGTCTTCCGCTTTCAGAAAAGAGTCAATCAGAAAAGAGTCAATCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGACGGGGGAGTATCCTTCACAGAGGCCACCAACTCCTATTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATCAAGGAGCTTTATCAACTAGCTGATGAAGTAAGATCTGATGTGATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCTAGCCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATGCCCCACAGGACAGGATTCTGTGGGACGTTGGTCATCAGTCTTATCCACATAAAATTCTTACTGGAAGGAGGGATAAGATGTCTACTATTAGACAGACAAACGGGTTGTCGGGTTTCACGAAACGGTCGGAGAGTGAATTCGATTGCTTTGGCGCAGGACACAGCTCTACCACCATCTCAGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTCAAGGGAAGAAAGAACAATGTAGTTGCAGTTATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCAGGCTACCTCGACTCCGACATGATTGTTATTCTTAATGACAACAAACAAGTCTCTTTACCGACTGCAACTCTCGACGGGCCGGTACCGCCTGTCGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCAAACAGGCCTCTCAGAGAATTGAGAGAGGTAGCCAAGGGTGTCACGAAACAAATTGGTGGCCCAATGCATGAATTAGCAGCAAAAGTTGATGAATATGCTCGTGGGATGATCAGTGGTTCTGGCTCAACATTGTTTGAAGAGCTTGGGCTCTATTATATCGGCCCTGTTGATGGAGTCACAAAGTTCGATCCAGCAACTGGGAAACAGCAGAAATCGAAGGCTGCGACGCAGTCGTATACGACGTACTTCGCAGAAGCATTGATAGCAGAAGCTGAAAATGACAAAGATATTATTGCAATCCATGCTGCAATGGGAGGAGGCACAGGTTTAAATCTCTTCCAAAGACGTTTTCCCACAAGATGCTTTGATGTTGGTATTGCTGAACAGCATGCTGTTACGTTTGCTGCTGGTCTAGCCTGTGAAGGCCTTAAACCGTTCTGTGCGATCTATTCGTCGTTCATGCAACGGGCGTTGTTCATGATGTTGATTTGCAAAAGTTGCCTATTTGCAATGGATAGAGCAGGCTTGGTTGGAGCCGATGGCCCGACTCATTGTGGTTCGTTCGATGTTACGTTTATGGCATGCCTGCCTAACATGGTGGTGATGGCCCCGTCCGATGAGGCCGAGCTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCTAGTTGTTTGCGGTATCCACGAGGGGAAAGAGTGGCTCTGTTGGGCTACGGAACAGCAGTTCAAAACTGTTTGGCTGCTGCATCGATGCTCGAACGCCATGGCTTACGAATAACCGTAGCAGACGGACGTTTCTGCAAGCCACTCGACCGAGCCCTTATCCGAAATCTCGCTAAATCACATGAGATTTTAATCACAGTGGAAGAAGGATCCATAGGGGGATTCGGCTCTCATGTCATCCAGTTCCTAGCACTCGATGGCCTCCTTGATGGCTCCTTGAAGTGGCGACCGCTAGTCCTTCCCGACCGATACATCGACCACGGATCACCAGCCGACCAATTGGCTGAAGCAGGCCTTACTCCATCTCATATTGCTGCTACCGTATTCAATATGCTTGGACAAACCAGGGAAGCTCTTGAGATCATGTCATAG 1920 48.49 MALCTLTFPAHVGRVAAKEHDGSRFLSGTDLVFRFQKRVNQKRVNQVKKRPGGICASLSETGEYPSQRPPTPILDTINYPIHMKNLSIKELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDCFGAGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGVTKFDPATGKQQKSKAATQSYTTYFAEALIAEAENDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRALFMMLICKSCLFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCLRYPRGERVALLGYGTAVQNCLAAASMLERHGLRITVADGRFCKPLDRALIRNLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGSLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNMLGQTREALEIMS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1665891 1671061 + Cp4.1LG12g02400.1 Cpe12g00249 478246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00249 639 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 331 505 IPR005477 GO:0008661|GO:0016114
Cpe12g00249 639 SUPERFAMILY TK C-terminal domain-like 504 628 IPR009014 GO:0003824
Cpe12g00249 639 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 412 IPR029061 -
Cpe12g00249 639 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 331 IPR005477 GO:0008661|GO:0016114
Cpe12g00249 639 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 505 635 IPR005477 GO:0008661|GO:0016114
Cpe12g00249 639 CDD TPP_PYR_DXS_TK_like 356 504 - -
Cpe12g00249 639 PANTHER BNAA01G35430D PROTEIN 505 635 - -
Cpe12g00249 639 ProSitePatterns Transketolase signature 1. 99 118 IPR005474 -
Cpe12g00249 639 Gene3D - 350 505 - -
Cpe12g00249 639 Gene3D - 506 629 IPR009014 GO:0003824
Cpe12g00249 639 Pfam Transketolase, pyrimidine binding domain 351 505 IPR005475 -
Cpe12g00249 639 CDD TPP_DXS 110 331 IPR005477 GO:0008661|GO:0016114
Cpe12g00249 639 Gene3D - 67 349 - -
Cpe12g00249 639 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 29 331 IPR005477 GO:0008661|GO:0016114
Cpe12g00249 639 PANTHER BNAA01G35430D PROTEIN 29 331 - -
Cpe12g00249 639 Pfam Transketolase, C-terminal domain 504 620 IPR033248 -
Cpe12g00249 639 PANTHER BNAA01G35430D PROTEIN 331 505 - -
Cpe12g00249 639 ProSitePatterns Transketolase signature 2. 451 467 IPR020826 -
Cpe12g00249 639 SMART Transket_pyr_3 350 510 IPR005475 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00249 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1153.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00249 Cpe17g00103 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00279 Cpe-Chr7:1838500 Cpe12g00249 Cpe-Chr12:1665891 0 dispersed
Cpe12g00249 Cpe-Chr12:1665891 Cpe14g00640 Cpe-Chr14:4117008 0 dispersed
Cpe12g00249 Cpe-Chr12:1665891 Cpe17g00103 Cpe-Chr17:637001 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00249 Cpe_Chr12 FPKM 8.163394 8.96722 10.191531 11.037987 12.49065 13.154773 12.925481 12.334633 12.003491 13.200138