Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00254 ATGACTCCCTTCTGGAGTGATCGCGTGGACATTGATTGTACGGATACCGAAGTCTTTGACGGCCATCTTTCACCGCCTACATGTTCTGGTAAACGATTTAGATTTCCAGTGATTATGCTGTCTGTGACTGGAAACTGTTATACTTTTCACCTTGATTTATCTTGTGGTTCGGGTAACACAGGTGAGGAAGCCGATAAAGCTGCGTGTTCTTCAAGAACAGTTGACTTTTATGATGACATGTTTAAAACTCAAGTAGTGAATCCTGTAAGTAATGAGTTTGAAACTCAATTAGTGGATCCCCTTGGAGAAACTCAAGTGTTCGATGTTGCGCGTGAAACCCAAATCTCGAGTCTCGGTGGTGAAACCCAGGAACTTGATGATCCCATTCCTGATTGTGTCAAGAATATGAACTTTGACACTCAAATATTGAATGATTCTGATGGTGAAGAGGCTGGTGATTGCTATGATGATGAAGGAACAGAGACAACTGAAATTAATCTCGATCTATCCGGCGATGAATCAGCCCAAAGTTATGATCAAATGACCTCTCTCCGTGGACATGATGCGCGGAAAGATTTAGAGGTACTACGAGACACGTTGCCTGATAAAAAATGTAATTCAGGACCCACACGACTTGCTTCGACTCGTGCAGCCTCATTGCGTGCCTCTGGTTTAGCAGCCCGTAGTTCTGCCATGAACACTAGAAGCCCCCGGTCTTCTTCTGTAATGATTGACAAGAGTATAGAAAAATCATCCTTAAAAGGTTATCACGTTGATTGGCAGAGTGATTTTGGGCAATTCTGTGAGATTGATGGAGATTCAGGTAACATTAAGTGCAGAGCTTCGATTCGTGTGGCTTCATTGCGTGCCTCTGGTTTAGCAGCTCGTTGTTCTGCCATGCAGACTAGAAACCCCACGCATTCGGTTATGATCGACAAGGATGTAGGAAAATCATCCTTAAAAGATAATCATGTTGAGCGGCAGGCCGATCTTAAGTGCAGGGCTGGCAGTTCAGCAGCGAGAAAGCTTTTTGCTGATGATTATATACCTGTTGGAGATTTAGGAGATCTCGACACAAGCCATGATGTCAGTGACGTTGACCTGCATCGTTTGACTGCATGTGATGGTGATCAGTTGGCAGGGTTAAGCTATGTCGACTCTCAAGAACCAGGGGATTTGACTCAAGACAATGCTCTTGATTTTGTTGAAAAGTTTCTTAAAGATAATTCTATGGAGTTTGATCAAGGAGGAGGAACCCATAAATTGGACGCTATGGTGCAACCGAAGTCTGTTCCTAACACGAAAGGACAATATAATCTGGCTAACATTGTTAATTGTATGAGAACAGTTGGAGAATCGAGAGCTTTTGACTGGGACGATAGTCGAGAAGATGAAGGAGGTGGAGATCTTTTCTGCAGAAGGAAGGAAGAGTTCTTCACCGAACCTCAAAATTTGAAAGGAAAACGAGTAGACTTGAATGGTGACTGGGAAGAATGTTTAAGTACAAAAAATATGAAATCGAGGTTATTTTGTTCTGATTCACGTCTAGAGTTGAGTAAAGGAAACGAGAACGAGTCATTCCGAGACGCCTACGTCAAATGCAAAATGAACCTATCCAATAAGTTGGATCAGCAGAATGATGGCGAAGCATGTTCGGGAGAGTTGGAAGATGATGGCGTCGATGATCAACAAGAAGTCTCTAATGTGGGTTTCGATACACAGATGGCAGCTGAGGCAATGGAAGCATTATTCCATGATGAGAGTATCCATAAGTTAGTTCATAATAATGGTCCAAAGGACTCTTTCAGAGGTTCTCCTTCTGGAAAGCCAGACTCGAGCTCAAAATCAAGGCGATCTGCTAGGGGACATGCTTCTAGTTCTCGGGTTGCCCCTAGGCAGTCGAGAAAAAGAAACCAGAAGTTTTCTGGAACTCTCAGGAACGTGTGTGGAACCGAGACTGTGAAATTGTCGGAACGGAGTAAGAAAAGAGACGCTGATGGAATTGGCCGTGACTCTAGTAATGGATGTAACACGGTTCAGAAGCAGCTTTTACGTGGAAAAATCGTTGAGGTTTCACCTGTTGCACATCGAACGAGGAATTCGATGATGCTAAATCAATCGAAAAAGGCTAAGATTACATCTGGTGAACGTGAGCGGTCGGTTACAAAGGTAGGTTCATCAATCAAGAAAAGTTGTGGTGATAGAGCCAATAGGGATTCTAAAGCAAAGAGAACAAAATCTTTAGAGGCTGCATCCGAGATTCTCGAAACAAAGTCGAAAGGCTCTGAAAATCGAGCAAAACGCTCCATAGGAGAGCGAAAATCGTGTGATATTTTTGTTGGTCCGCTAAGTCTGTCGGAAGATTTACTTGGACGAACTATGAATAAGCGCAAGAGGTCGTGTAACATGAAGAAAACACGATCATCACCTCGTTTAACCGAGAACTTGGAAAGACCAACCATTGGTAGATTGTCCATTGAAGATTCAAACAGGCCAAATTCTGTTCAGCAGTTAAAGAAAAAAAACGATGGATGTTCGGTTTCTTCTATTGTAAACACTACGGTCGATACATTTCCGAGTAAAAGGCATAAACCATCCGACACAGTTTGTGCTACTCCGCCCGATAACTGTAGGACGCCTAGAAATGCTGCATCACCTGTTTGTATGGGCAGTGAATATTACAAACAATCATGCAAAAAGGGCCTCTCGAAACCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCTCCGGGTTTTGTGTCGGGATCATTTCGTACTGAATCGAGGAAGAGAAAAGATATGAATGACGTTCGAGTCTTGTATAGCCAACACCTTGATGAGGACATAATCAAACAGCAAAAGAAGACGTTGACTCGCCTAGGGGTTACCGTCGTATCGTCCATGACCGAGGCAACACATTTCATTGCCGATAAATTCGTACGTACGAGGAATATGTTAGAAGCCATTGCTCGGGGTAAGCTTGTCGTGACACACCTATGGATTGAGAGTTGTGGACAGGCAAGCTGCTTCATCGACGAAAAGAATTACCTCCTACGAGACGCCAAGAAGGAGAAGGAATTTGGCTTTAGCATGCCAGGTTCTTTGGCATGTGCTCGCCAGCGTCCTCTTCTCGAGGGTCGACGCGTGTTGATTACTCCAAATACAAAGCCTGGGAAAGACGTCGTTTCGAGATTGGTCAAGGCAGTAAAGGGTCAGGCAGTAGAAAGAATCGGGAGGTCTATGGTGAAGGATGATCAAATTTCAGATGATTTGTTGGTTTTGTCGTGCGAAGAAGATTACAATATGTGCATGTCTTTTCTTCAAAAAGGCGTCTCGGTGTATAGTTCTGAGTTGTTACTTAATGGGATCGTAACTCAGAGGCTTGAATTTGAAAGGCATCGTCTTTTTGCAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGATGGAAATAAGTTCTATTCTGTTACCAAACGTCGATAA 3492 43.33 MTPFWSDRVDIDCTDTEVFDGHLSPPTCSGKRFRFPVIMLSVTGNCYTFHLDLSCGSGNTGEEADKAACSSRTVDFYDDMFKTQVVNPVSNEFETQLVDPLGETQVFDVARETQISSLGGETQELDDPIPDCVKNMNFDTQILNDSDGEEAGDCYDDEGTETTEINLDLSGDESAQSYDQMTSLRGHDARKDLEVLRDTLPDKKCNSGPTRLASTRAASLRASGLAARSSAMNTRSPRSSSVMIDKSIEKSSLKGYHVDWQSDFGQFCEIDGDSGNIKCRASIRVASLRASGLAARCSAMQTRNPTHSVMIDKDVGKSSLKDNHVERQADLKCRAGSSAARKLFADDYIPVGDLGDLDTSHDVSDVDLHRLTACDGDQLAGLSYVDSQEPGDLTQDNALDFVEKFLKDNSMEFDQGGGTHKLDAMVQPKSVPNTKGQYNLANIVNCMRTVGESRAFDWDDSREDEGGGDLFCRRKEEFFTEPQNLKGKRVDLNGDWEECLSTKNMKSRLFCSDSRLELSKGNENESFRDAYVKCKMNLSNKLDQQNDGEACSGELEDDGVDDQQEVSNVGFDTQMAAEAMEALFHDESIHKLVHNNGPKDSFRGSPSGKPDSSSKSRRSARGHASSSRVAPRQSRKRNQKFSGTLRNVCGTETVKLSERSKKRDADGIGRDSSNGCNTVQKQLLRGKIVEVSPVAHRTRNSMMLNQSKKAKITSGERERSVTKVGSSIKKSCGDRANRDSKAKRTKSLEAASEILETKSKGSENRAKRSIGERKSCDIFVGPLSLSEDLLGRTMNKRKRSCNMKKTRSSPRLTENLERPTIGRLSIEDSNRPNSVQQLKKKNDGCSVSSIVNTTVDTFPSKRHKPSDTVCATPPDNCRTPRNAASPVCMGSEYYKQSCKKGLSKPSLLKELRDLTAPGFVSGSFRTESRKRKDMNDVRVLYSQHLDEDIIKQQKKTLTRLGVTVVSSMTEATHFIADKFVRTRNMLEAIARGKLVVTHLWIESCGQASCFIDEKNYLLRDAKKEKEFGFSMPGSLACARQRPLLEGRRVLITPNTKPGKDVVSRLVKAVKGQAVERIGRSMVKDDQISDDLLVLSCEEDYNMCMSFLQKGVSVYSSELLLNGIVTQRLEFERHRLFADHVKRTRSTIWLKKDGNKFYSVTKRR 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1692265 1697580 - Cp4.1LG12g02590.1 Cpe12g00254 478251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00254 1163 SMART BRCT_7 931 1008 IPR001357 -
Cpe12g00254 1163 SMART BRCT_7 1041 1126 IPR001357 -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 732 748 - -
Cpe12g00254 1163 Gene3D BRCT domain 1042 1143 IPR036420 -
Cpe12g00254 1163 ProSiteProfiles BRCT domain profile. 929 1018 IPR001357 -
Cpe12g00254 1163 Gene3D BRCT domain 922 1041 IPR036420 -
Cpe12g00254 1163 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 927 1018 IPR001357 -
Cpe12g00254 1163 SUPERFAMILY BRCT domain 927 1034 IPR036420 -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 224 243 - -
Cpe12g00254 1163 CDD BRCT_PAXIP1_rpt6_like 1043 1129 - -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 592 676 - -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 707 748 - -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 655 669 - -
Cpe12g00254 1163 CDD BRCT_MDC1_rpt1 937 1011 - -
Cpe12g00254 1163 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 106 1143 - -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 626 654 - -
Cpe12g00254 1163 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 106 1143 - -
Cpe12g00254 1163 MobiDBLite consensus disorder prediction 226 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00254 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1374.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00254 Cpe17g00100 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00254 Cpe-Chr12:1692265 Cpe12g00974 Cpe-Chr12:8210630 2.00E-16 dispersed
Cpe19g00032 Cpe-Chr19:241917 Cpe12g00254 Cpe-Chr12:1692265 4.59E-17 transposed
Cpe12g00254 Cpe-Chr12:1692265 Cpe17g00100 Cpe-Chr17:617338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00254 Cpe_Chr12 FPKM 10.395676 10.220536 8.037204 8.743804 15.925877 12.005531 17.041168 2.057551 1.940192 1.794395