Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00255 ATGGATTGCAACAAAGATGAAGCCATTAAAGCAAGGGAGATTGCTGAGAAGAAGATGGAAAGCAAAGATTTCACGGGGGCTCGTAAGCTTGTTCTCAAGGCTCAACAGCTAAATCCGGACGCAGAGAATATTTCGCAAATGCTCATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAGCTTTTAGGGAATGAGATGGATTGGTATGCCATCCTTCAGATCGAGCAAACAGCAAATGAGGCGACGATTAGGAAGCAATATCGGAAGTATGCTCTTCTACTTCATCCTGATAAAAACAAATTTATTGGTGCGGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAACGAGTGCTGTTGGACCAAGAGAAACGCCGATTGCATGATATGAGACGCAGACCAGCTATACCGTATCAACCTCCACATAGAGCTGCTCCATCCTTTAATGTCGGGGTTCAAGCTAATTTCAGAAGCAACTTTACGAGCTTCATTCCTCAGCATCAGCCGCCTCAACAGCAAGGACACTCAGGGTTCAGTCATAATCGCGCGACGTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTACCAGTACTATAAAGAAGTGGTTAATAGATCACTATGCTGTCAGAATTGCAAGAAGCCCTTTGTTGCATATGATATGGAACTACAAGGGGCTCACCCTCAACCCATGTCGAACTTGAACCAGACATCATTTTTCCAGCAGCAGAGTTCCTTCAATCACAAGGCTGATACAGGACGCCCGGGAAACTCTCAGTCTGACAAGCGTCGGAGGACACGCAGCACCTCGGCTGCTGCTTCAGAAAAATTCACTGGTAAAAAGAAAAGGAAGCAGACTTCTGAATCTAGTGAGAGTTTTGATACGGGAACCAGCTCCGATCAAGAGGAAAATGTTGTTACTGATGAAGATAGCAGAAAGGATGTTGGTTGCTCGGGAGAGCAACGTCAGCGTAGATCGGTTCGAAGCAGGCAGAAGGTTTCTTACAATGAGAATGTAAGTGATGATGACAACGATGACTTTGTGATCACTCCAAAAAAATCAAAGAGAAGAAAATCATCAATCGTTTCTGACGACGACGTTGAAGAAGTATATGTAGATGGGGCATCTAAAATCAATAACCATTACAGATCTGTTGATTTGGATGCTGATCGGAAGGAAGTAAATAAGCAAGAAAATCATTGCTCTGAACGGAATTTATCGAATAGAAACAAGGGAAGTAAGAAGGCGAGTCATAAAGAAACGGCAGATAAGGATGTTTCTCAGGGAAGCACGGAGTCAGCTGGTGATCCCAAGTGTAATTTTCTTTCATGTTCTGATCCCGATTTCCATGATTTTGATAAACTGCGGAATCGAGAATGTTTTGCTCTCGGGCAGATCTGGGCTATGTATGATGATATTGATACTATGCCTAGATTCTATGCTTGGATCAAGAAAGTGTTTCCTTCTGGATTCAAGGTCCAAATCACTTGGCTCGAGCCAGAAGTAACCGATGATGGCCGAAGAAAATGTGTCGATAAAGAAATGCCAATTTCCTGTGGTGAGTTTGTTTTCGGAGCAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGTTGTTTCCTGGGACAAAGGCTGTCGTAAAGACAGTTTCAAGATTTATCCAAGGAAAGGGGAAATTTGGGCTCTCTTCAAGAACTGGGATGAGAACAGTAACTGTGATTCCAATAGCCGATACGAGTATGAGTTTGTTGAGACATTATCGGAATTTACCGAAGAAGCTGGTGTCGATGTTGCATTCTTAGCTAAGGTGAAAGGCTTTTCGTGTCTCTTTTGTCGAACAGTCAAGGAAGGAGGAAAACCAGTTAGAGTCCCTGCAGCTGAGTTGTTCAGATTTTCGCATCGGATTCCTTCGTTTCCACTCACCGGTGACGAACGAGAGGATGTTCCAGAAGATTCTTTGGAACTTGACCCAGCTGCTCTTCCCCCCAATGTTCCTGAAATTGTGATCCCTGTGCAATTAAAAGAGATGGCCGCTGCTGCTGATATTAAGACAGGTCTCCGGTCTGAGAGCGATGATGCTAATGTACCTGTAGCTTCGTCGGGCGAGGCTTATGAGATTCCAGATCCTGAATTTCACAACTTCGACGTTGACAAATCTTCTGAGAAGTTCAGCATTGGTCAGGTCTGGGCACTGTACAGTGACGAGGATGCCTTGCCGAGGTACTATGGTCTGATCAAGAAGATAACTCGTGAACCACGGTTCGAAGTGAAGTTGACGTGGCTCGAGTCCTCATCCCTGCCAAATGACACTATCGAATGGCACGATAAAGGCATGCTGATTCCTTGTGGGAGATTTAGAACTCAAAGGAGAACTACCATGCACTGCTGCACTTCCACCGATCCCTTTTCACATCTGGTTAGAACTGATTCTGCTCCTAACAGTGGCTTCTCCATCTTCCCTAGAACTGGTGAAGTTTGGGCATTATACAAGAACTGGACTCCTGAAATCAGATCTTCAGATTTAGAAAAATGTGAATACGATATAGCAGAAGTCATCGACGACGACGATTCACATAAAGAAGTTATGGTCTTGAAACGCGTCGATGGCCATAACTCGATCTTCAAGGCTCAAACCAAAAACGATGGTTCCACACTCACTATGACAATTCCTCAAGCCGAGCTTCTACGATTCTCTCATCAGATACCTGCTTTTCGGTTGACAGACGAGCTGGGTGGTAGCTTGAGAGGTTGCTTGGAACTTGACCCTGCCGCTTTACCAATATATTATTTTTCTTGA 2799 44.41 MDCNKDEAIKAREIAEKKMESKDFTGARKLVLKAQQLNPDAENISQMLMVCDVHCAAEKKLLGNEMDWYAILQIEQTANEATIRKQYRKYALLLHPDKNKFIGAEAAFKLVGEAQRVLLDQEKRRLHDMRRRPAIPYQPPHRAAPSFNVGVQANFRSNFTSFIPQHQPPQQQGHSGFSHNRATFWTVCPFCSVRYQYYKEVVNRSLCCQNCKKPFVAYDMELQGAHPQPMSNLNQTSFFQQQSSFNHKADTGRPGNSQSDKRRRTRSTSAAASEKFTGKKKRKQTSESSESFDTGTSSDQEENVVTDEDSRKDVGCSGEQRQRRSVRSRQKVSYNENVSDDDNDDFVITPKKSKRRKSSIVSDDDVEEVYVDGASKINNHYRSVDLDADRKEVNKQENHCSERNLSNRNKGSKKASHKETADKDVSQGSTESAGDPKCNFLSCSDPDFHDFDKLRNRECFALGQIWAMYDDIDTMPRFYAWIKKVFPSGFKVQITWLEPEVTDDGRRKCVDKEMPISCGEFVFGATETMTDCGSMFSHVVSWDKGCRKDSFKIYPRKGEIWALFKNWDENSNCDSNSRYEYEFVETLSEFTEEAGVDVAFLAKVKGFSCLFCRTVKEGGKPVRVPAAELFRFSHRIPSFPLTGDEREDVPEDSLELDPAALPPNVPEIVIPVQLKEMAAAADIKTGLRSESDDANVPVASSGEAYEIPDPEFHNFDVDKSSEKFSIGQVWALYSDEDALPRYYGLIKKITREPRFEVKLTWLESSSLPNDTIEWHDKGMLIPCGRFRTQRRTTMHCCTSTDPFSHLVRTDSAPNSGFSIFPRTGEVWALYKNWTPEIRSSDLEKCEYDIAEVIDDDDSHKEVMVLKRVDGHNSIFKAQTKNDGSTLTMTIPQAELLRFSHQIPAFRLTDELGGSLRGCLELDPAALPIYYFS 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1699027 1701825 - Cp4.1LG12g02620.1 Cpe12g00255 478252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00255 932 MobiDBLite consensus disorder prediction 254 288 - -
Cpe12g00255 932 Pfam DnaJ domain 67 128 IPR001623 -
Cpe12g00255 932 SMART dnaj_3 66 123 IPR001623 -
Cpe12g00255 932 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cpe12g00255 932 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cpe12g00255 932 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cpe12g00255 932 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 700 931 - -
Cpe12g00255 932 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 703 - -
Cpe12g00255 932 MobiDBLite consensus disorder prediction 304 363 - -
Cpe12g00255 932 Pfam Domain of unknown function (DUF3444) 704 910 IPR024593 -
Cpe12g00255 932 Pfam Domain of unknown function (DUF3444) 441 645 IPR024593 -
Cpe12g00255 932 CDD DnaJ 67 120 IPR001623 -
Cpe12g00255 932 Gene3D DnaJ domain 64 176 IPR036869 -
Cpe12g00255 932 MobiDBLite consensus disorder prediction 245 363 - -
Cpe12g00255 932 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cpe12g00255 932 PANTHER - 700 931 - -
Cpe12g00255 932 PANTHER - 1 703 - -
Cpe12g00255 932 SUPERFAMILY Chaperone J-domain 64 158 IPR036869 -
Cpe12g00255 932 MobiDBLite consensus disorder prediction 387 435 - -
Cpe12g00255 932 MobiDBLite consensus disorder prediction 387 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00255 - - - bhj:120092937 1541.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00255 Cpe17g00099 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00608 Cpe-Chr5:3709645 Cpe12g00255 Cpe-Chr12:1699027 1.29E-36 dispersed
Cpe12g00255 Cpe-Chr12:1699027 Cpe13g00310 Cpe-Chr13:2614716 2.10E-39 dispersed
Cpe04g00133 Cpe-Chr4:1206276 Cpe12g00255 Cpe-Chr12:1699027 1.09E-33 transposed
Cpe12g00255 Cpe-Chr12:1699027 Cpe17g00099 Cpe-Chr17:612964 5.04E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00255 Cpe_Chr12 FPKM 12.480062 16.091276 11.371474 13.838642 21.413977 22.215212 21.985407 19.657806 21.422625 18.921503