Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00258 ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGTTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACCTGGAACACAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGCCTGGTCCAAGGGATCATATTGTACGTTGTTTCATAAAGCGAAACAGCTCCAACCAGACCTATCATCTCTTCCTCAATTTGACAAATGCACTAACTGAGGATGGTAAATTTCTACTTGCTGCTCATAAATGGAAGCAATCGACCTACACGGATTACGATATCTCTTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCGCCACGTTCCGAAGCCAAGATCACGGAAAGCACGAAAAGCCCGCAAAGTCGCTCCTCAAGGACAGTGCATCTGAATGAAGTTTCACCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTGTCATGGACGCCATTCCCCCCTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCCGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCTTTTTGGAGGTTGAATTCAGATACGGATAGCTTGATGTCTAAACCTTTGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCGGCTTCAATGCTGGTGTTTAAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCATCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGGTTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGA 1179 48.01 MSLKRFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQPGPRDHIVRCFIKRNSSNQTYHLFLNLTNALTEDGKFLLAAHKWKQSTYTDYDISLCAEDSSKGSDTIVGKLRSNFLGTKFTIFDKQPPRSEAKITESTKSPQSRSSRTVHLNEVSPNVPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPPSAVEPGGVAPTLAELSLRNIELIPSFPFWRLNSDTDSLMSKPLDSQEDGILMLRNKTPRWHERLQCWCLNFHGRVTIASVKNFQLVASREDEQPTDDHDTIILQFGKVGKGLFTMDYRYPISAFLAFAICLSSIDTKIACE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1722248 1725882 + Cp4.1LG12g02550.1 Cpe12g00258 478255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00258 392 MobiDBLite consensus disorder prediction 192 215 - -
Cpe12g00258 392 MobiDBLite consensus disorder prediction 186 215 - -
Cpe12g00258 392 Gene3D Tubby Protein; Chain A 92 392 IPR025659 -
Cpe12g00258 392 Pfam Tub family 96 387 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 221 248 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Cpe12g00258 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Cpe12g00258 392 SUPERFAMILY F-box domain 30 79 IPR036047 GO:0005515
Cpe12g00258 392 Pfam F-box domain 35 83 IPR001810 GO:0005515
Cpe12g00258 392 SUPERFAMILY Tubby C-terminal domain-like 85 392 IPR025659 -
Cpe12g00258 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Cpe12g00258 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 392 - -
Cpe12g00258 392 PANTHER TUBBY-RELATED 1 392 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01389 Cpe12g00258 CCT
Cpe03g01389 Cpe12g00258 ECH
Cpe12g00258 Cpe17g00002 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00258 Cpe-Chr12:1722248 Cpe14g00302 Cpe-Chr14:1776558 2.14E-141 dispersed
Cpe12g00258 Cpe-Chr12:1722248 Cpe17g00002 Cpe-Chr17:23583 0 wgd
Cpe12g00258 Cpe-Chr12:1722248 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe12g00258 Cpe-Chr12:1722248 Cpe08g00216 Cpe-Chr8:1432750 4.03E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50300 PF01167 Tub 2.30E-100 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00258 K19600 - csv:101203437 590.497