Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00266 ATGGATTCTGCTTCTCTGAAGAAGGGTTTCTGTTCTGTTTTTGGGAAGATGATTATTGGAACTAGGGTTTTGGGTTCACATTTAATGGTGGGCTCTGTGGAGCCGATGATTATTGGGGATTGCATTGACATGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGAAAATGGCGGTGATATTGACCCTGATATTGCTCTCTCTTACATTGATGAGAAGATCGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTCGAAGGTGGAGTTTCAGCCGAAAAGTTAGGTGCAAAGTATGGTGGTTATGGCTCATTTTTGCCTACGTACGAACGTGCTCCATCCATTTTGCCACACAATATAAATCAACAAAGCGACTGCAATGCAGCAGCACCAACTCCAGCTAATGTGCCCTTGGAGAATCCAAAAGCTCCGCCGCCGAAGAGGTCGGAAGCTATTGTTTGCAATGCTATTTCCTCTCACAATAAAAGGGCAACTTCTGGGAGGGTAGATTCGTGCTTACCTGCTACTAGAGTTACTAATAGCTACCCCTCGAAAGAGGAAGCCACGGGCAGATTAGGCAGTCCAATGAGCAACAGATCGCTTAAATTTCGACTCAAAGTTGGTTCCGACAGCACTGCATTGAAAAATGCAGCGATATACAGTGGCCTTGGACTCGATGACTCTCCATTGTCATCATCGGAAAACAGCTCCGACGTTAGTGAAGGGATGCTGCCCATTTCTCAAAGTTCACCAGACGAGTCTCCGACTAAGATAATTCAGGCAATGACTTCTTTCCCAGTGCCTCATGGAGCATTGATATCACCTCTTCATGATAGCCTACTCGGGCTGTCGAGAAAGGAAAAACCAATACGAGAAACCAAACCCGTGCTTTCCCTTGAGGATAAAAAAGATGGTTTGGCCAAGCTTGCCAGTGGGACAATTTTAAAGCAAAACGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGACGGGGCATAAAGAACGGCAGGTCAATCCTAAGAATGAAGTTTATGCTTCTCGTTGCGAGGAGAAGACGACTCTAACTCTCGTAAATGGAAAATCAGAAAACGAGGCTTTTGTAAGCAAGGATTTACTCTCTAATGAGTTGCAATGCAAACCCGGTTCCGAGGTTACTAAGTCCAATGCGTACTTAGACCCACAAAAGAAGAAGCTTTCTCGTAAACCTACGCTACATGAAACGGACAAAGACAAAGCATCGATTAAGAAAGAAAAGCCCGGAATTGTTGGCGAGAAGAATTTGAAAGTTATACAGACTGCTGGTGGGAAAATAGCTGGTTCATTTGAGGAAGGCTTCAAGAATAGAAGTGAAGCATTCAAAGGTAGAAAGGACACTGATTCTGACACTCCAGAATCTGAAAATAGAAAGCACAGGTTAAAACTACACAGCAATGAGAAAGTAGGAACAAACAATGGGGATTCTTTTAACCGCACGGGGTTAGATGAAAACCGTAAAAGTAAGGATGTAATTGAAAGGGCCTCCGGTGACATACGGAGGCTCGACGGCCTATATGACAGTGGAATCAAATCGTCTAAATCCTTGAAGGTGGTCGAACCAGCAGCAGGGGTGGCTCCTGTGGATGAATGGGTGTGCTGTGACATTTGTCAGAAATGGCGCCTTCTGCCCTTCGGGACAAAACCCGATCAACTTCCTGATAAATGGTTATGTAGCATGCTCAATTGGCTGCCCGGGATGAACCGGTGTGACATTAGTGAGCAGGAGACGACGGAAAAGCTTTATGCTTTGTACCAGCTACCATTGCCTGAGAGTGGAAATGCTTTGCAGGGCCATGGCAATGGACTAATAGCAGGTGATACTTCAAATGAGGGAAAAAGGAAAGAAATACAAAATCCAGTTAGCAGAAATGGCCCTACTCTTCCAAAGAGTTCTTTGAAAGATCCGCTGCTGGAGTCGAGGAAAAAACGAAGTCTTTATGGCTCAAGTAACGTTCCAAATCAGTTGAAAAATTCAACGGATCGATCTTCTAGTGACCTGCACAACTCGGTAGAGGGAAAGAACCGAGGTAAACTAAAAGAAAAATCGACCGAAAAAGCTAATTGCGACGTATTGAAAAGGAAGAACAAGAGACCGGAAGGCGTGCGCTCTGTCGACAGTCATCAAGACTTCAATATGGAGCTCGGAAAATTGGGTTGTAGTTCGAATTCTGGCTTGACAAATATGGAAGGTGGGGAAGGTATGTTAAAGAAGCACAACAAATCGAACACTGAGAATAAAATGCAAATTTCATTGAAGAAACGTGGAGAAACAGCTGAGATCACAAAGAAAAGGAAAGTGAAGGATTGGCAGGATGATCAAAATTCTCATAACAGTGCACTACTCCATGAACCCGTGCGTTCGAAGGAAGAAAGTTGTGAAAGGTCGAAGAAGAAAAAGAGGTTTGATCGTGTCGAAGAAATCAGCCATGATAAGGATAACGAGCCGAAAATGCAAAATAAGAAGAATTTTGCTAAACAAACGTCAGTCGGTAAGGAGTTACTGAAGAGAAATTTAGTTGCTCGACAAGTATCAGCGGCAGGTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACTAAAGCCAAATTTGGCGTGAAAGTATCTCCTGCTGAATCAGTTTCGTCGTTGCCGATGAGGACATCTGGCCTCGATCAATTTCAAGGAGAAAAAGAGGAGATTACCTCTAATATTCATACCGACTCTCGTAAAGTTACACCGGCGTTTGACATTGGGGTTAAGGATACTGCTCTCGACACAAACAGCAAGAAAATCAAAGCTTCTTCTGTCGTTCGACGCCATGTCGTTACTGCTGATGTTAATGCTGTTAAGGATCCTAGGTTGAGCAAGCCCAGCAACAAGAAACGCAAGAAAGAGAACATACATATTGCTGGTGAAGGACTGGAAGCCCCTCAAAAACTCAAGGGTCACGACGCCGAAGACCAGAGATCGGGTGCTTTACTTCAATCAAATAAAGCAGTTAAACTTCAGACAAAGCTAAGTCGGGATTCCGAAGCGGGAAATAAAGGTGGTCCGAGAACAGTAGAAACAAGGGATGGAAAATCAAAATGCTCCTCTTCTGGAGGTGAATGCAAAGAACCGTCACGTCTCGGTGGTGATCCTTTACGAGTTTCTATTAGAGCAGGCGATTCTCATCAGCTTATTACCGATGCTTCTAAAAGTGGTGATGCAGTCGAGTTGAAGACAATAAAGAATGAACTTAACCACGGATATCAAAAACCCGATCTGCCAGGATCTAGAGATGTTAATGCTTCAAATCTCGACAGAACGAAATTCTCGAATCAGACTGCTTGTAATACATTGAAAGAAGCCAAAAAACTCAGAGACAATGCAGATCACTTCAAGAGTTCTGGATTCACTTTTGAAAGTAATGAGCTTTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTCTAGAGACACTTGATAATACGAGTGGCAAGCCTGGTGATGTTTCTCCCATTCAATTCTATGGCATTACAGCTGAATTGTGCGAGATCTGTGCTCTTGAATTTGAATGTCGCCAAGAAATGGCTGCAGCTGCTTTGGCTTTTAAATGTATCGAAGTAGCTTATTTGAGGATCGTTTACCATAGACATTCAAGTGTCGATGGAGATCGCCTCGAGATGCACTCGTTGTTCCGTACAATTGTTCAAGGCGAATCTCCGTCTTCTTCGATATCCGATGTCGATAACTTAAGTAATCAAGGAGCTATGGATAAGGCGACTTTTGACAAGGGCAGTTCCCGAGGTGCGGGTAATCACATCTGGAATGCTGCAAACTGCGCGAGTTTTGCTCGGGTCCTCGACTTTGCGCGGGATATGAATTCAGCTATGGAGGCGTCGAGAAAATCTCGAAACGCGTTTGTGGCAGCTACTACGACATGTGGGAGCGAAGGAAAACATGTGGACTATGTTGTTGAATCAGTTAAAAAGGTGATTGATTTCAGCTTCCAAGAAGTGGAGGAGCTCGTGCAGTTGGTTCGAGTCGCTACACAGATAATAACCCGCTCGGGTTTTCGCAGTGGTAGAGAGTAG 4095 43.86 MDSASLKKGFCSVFGKMIIGTRVLGSHLMVGSVEPMIIGDCIDMEEGEASCYHKENGGDIDPDIALSYIDEKIERFLGHFQKDFEGGVSAEKLGAKYGGYGSFLPTYERAPSILPHNINQQSDCNAAAPTPANVPLENPKAPPPKRSEAIVCNAISSHNKRATSGRVDSCLPATRVTNSYPSKEEATGRLGSPMSNRSLKFRLKVGSDSTALKNAAIYSGLGLDDSPLSSSENSSDVSEGMLPISQSSPDESPTKIIQAMTSFPVPHGALISPLHDSLLGLSRKEKPIRETKPVLSLEDKKDGLAKLASGTILKQNDSTLVKKKKKETGHKERQVNPKNEVYASRCEEKTTLTLVNGKSENEAFVSKDLLSNELQCKPGSEVTKSNAYLDPQKKKLSRKPTLHETDKDKASIKKEKPGIVGEKNLKVIQTAGGKIAGSFEEGFKNRSEAFKGRKDTDSDTPESENRKHRLKLHSNEKVGTNNGDSFNRTGLDENRKSKDVIERASGDIRRLDGLYDSGIKSSKSLKVVEPAAGVAPVDEWVCCDICQKWRLLPFGTKPDQLPDKWLCSMLNWLPGMNRCDISEQETTEKLYALYQLPLPESGNALQGHGNGLIAGDTSNEGKRKEIQNPVSRNGPTLPKSSLKDPLLESRKKRSLYGSSNVPNQLKNSTDRSSSDLHNSVEGKNRGKLKEKSTEKANCDVLKRKNKRPEGVRSVDSHQDFNMELGKLGCSSNSGLTNMEGGEGMLKKHNKSNTENKMQISLKKRGETAEITKKRKVKDWQDDQNSHNSALLHEPVRSKEESCERSKKKKRFDRVEEISHDKDNEPKMQNKKNFAKQTSVGKELLKRNLVARQVSAAGNSSSSNVSQSHLTKAKFGVKVSPAESVSSLPMRTSGLDQFQGEKEEITSNIHTDSRKVTPAFDIGVKDTALDTNSKKIKASSVVRRHVVTADVNAVKDPRLSKPSNKKRKKENIHIAGEGLEAPQKLKGHDAEDQRSGALLQSNKAVKLQTKLSRDSEAGNKGGPRTVETRDGKSKCSSSGGECKEPSRLGGDPLRVSIRAGDSHQLITDASKSGDAVELKTIKNELNHGYQKPDLPGSRDVNASNLDRTKFSNQTACNTLKEAKKLRDNADHFKSSGFTFESNELYFQSALKYLHGAFLLETLDNTSGKPGDVSPIQFYGITAELCEICALEFECRQEMAAAALAFKCIEVAYLRIVYHRHSSVDGDRLEMHSLFRTIVQGESPSSSISDVDNLSNQGAMDKATFDKGSSRGAGNHIWNAANCASFARVLDFARDMNSAMEASRKSRNAFVAATTTCGSEGKHVDYVVESVKKVIDFSFQEVEELVQLVRVATQIITRSGFRSGRE 1364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1770247 1776732 + Cp4.1LG12g02560.1 Cpe12g00266 478263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 653 675 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 1022 1036 - -
Cpe12g00266 1364 PANTHER CW-TYPE ZINC-FINGER PROTEIN 385 1358 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 380 417 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 605 713 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 446 475 - -
Cpe12g00266 1364 ProSiteProfiles Zinc finger CW-type profile. 534 587 IPR011124 GO:0008270
Cpe12g00266 1364 PANTHER CW-TYPE ZINC FINGER 385 1358 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 223 252 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 773 827 - -
Cpe12g00266 1364 Gene3D - 528 589 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 994 1014 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 952 1052 - -
Cpe12g00266 1364 PANTHER CW-TYPE ZINC-FINGER PROTEIN 39 382 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 391 417 - -
Cpe12g00266 1364 Pfam CW-type Zinc Finger 539 585 IPR011124 GO:0008270
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 446 491 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 224 252 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 792 827 - -
Cpe12g00266 1364 PANTHER CW-TYPE ZINC FINGER 39 382 - -
Cpe12g00266 1364 MobiDBLite consensus disorder prediction 676 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00266 - - - bhj:120067193 1901.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00266 Cpe17g00012 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00266 Cpe-Chr12:1770247 Cpe17g00802 Cpe-Chr17:6276258 6.94E-28 dispersed
Cpe12g00266 Cpe-Chr12:1770247 Cpe17g00012 Cpe-Chr17:94473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00266 Cpe_Chr12 FPKM 8.129117 8.665313 10.483316 10.665458 10.951431 8.483561 10.616807 17.75305 20.290829 21.088884