Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00281 AAGATGAATTCTGAGTTGTTTCGAAGAAATCAATCGAATCCGACGCTACAAACTCATGATTCCGTGATTGGTCCACCGAGGACTCCGGCAGGTTGTTCAAGCAAATTCAGGAGTCCGATCCGTTACATGCTTCGCGAGCAGCGTCTTCTCTTCGTTTTCGTCGGTATTGCGATTGCAACTCTGTTGTTTAACGTTGTCCGTTTGACTTATCCGTTGGAGTTTCGTGATGATCAACGGTATCGAGCGGAGTTGAATCCTTTCGTTCGATTGGATTCGTCGATCCCGATGCGGAGAGTTCTGTACGAAACTCGCCGTGAAGGATCGCTAGGGCGGGTGAATATGGCGGGTAAAGTCCCGCCGGGATTGAAGAAGAGGAACCTGAGGATCGTAGTTACCGGCGGCGCTGGATTCGTTGGAAGCCATCTCGTGGACCGTCTGATGGAGAGGGGCGATAACGTGATTGTCGTTGATAATTTCTTCACCGGCCGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTCGAACTGATCCGACACGACGTTGTCGAGCCGATTCTATTGGAAGTTGATCAGATCTTCCATTTAGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCCACCAATGTCGTCGGCACATTGAACATGCTAGGGCTTGCGAAGAGAGTTGGCGCTCGGTTTTTGCTGACCAGCACCAGCGAAGTCTACGGCGATCCGCTCCAACACCCGCAGGCTGAAACATACTGGGGCAACGTCAACCCCATCGGTGTTCGGAGCTGCTACGATGAAGGAAAACGCACGGCGGAGACTCTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTCCGGATTGCTCGGATATTCAACACTTATGGACCACGGATGTGCATCGATGACGGACGAGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTTTATGGAGATGGCAAGCAGACCCGGAGCTTTCAATACGTTTCTGATCTGGTGGAGGGTTTAATGAAACTCATGGAAGGTGAGCACGTGGGCCCTTTCAATCTCGGCAACCCCGGTGAATTCACTATGCTTGAACTTGCTCAGGTAGTGCAAGAGACAATAGATCCAAATGCAAGGATAGAGTTCAGGCCGAACACAGAAGACGACCCACACAAGAGGAAGCCCGACATTTCCAAAGCTAAGGAGCTTCTTGGTTGGGAGCCCTCTGTGTCCCTTCGTAAGGGCCTTCCCCTTATGGTTTCCGACTTCCGTCAGCGCATCTTCGGCGACCTCAAAGACGACGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCACCCTCTCCGACCTCTCCACCACCTCCTCCGTCTAG 1374 51.82 KMNSELFRRNQSNPTLQTHDSVIGPPRTPAGCSSKFRSPIRYMLREQRLLFVFVGIAIATLLFNVVRLTYPLEFRDDQRYRAELNPFVRLDSSIPMRRVLYETRREGSLGRVNMAGKVPPGLKKRNLRIVVTGGAGFVGSHLVDRLMERGDNVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPILLEVDQIFHLACPASPVHYKFNPTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDISKAKELLGWEPSVSLRKGLPLMVSDFRQRIFGDLKDDASSSSSSSSAATLSDLSTTSSV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1877593 1881852 - Cp4.1LG12g02800.1 Cpe12g00281 478278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00281 457 MobiDBLite consensus disorder prediction 433 457 - -
Cpe12g00281 457 MobiDBLite consensus disorder prediction 1 30 - -
Cpe12g00281 457 CDD UGD_SDR_e 128 425 - -
Cpe12g00281 457 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 2 443 IPR044516 GO:0042732|GO:0048040|GO:0070403
Cpe12g00281 457 MobiDBLite consensus disorder prediction 1 22 - -
Cpe12g00281 457 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 125 429 IPR036291 -
Cpe12g00281 457 Gene3D - 123 244 - -
Cpe12g00281 457 Gene3D - 245 429 - -
Cpe12g00281 457 Pfam GDP-mannose 4,6 dehydratase 131 418 IPR016040 -
Cpe12g00281 457 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 2 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00281 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:101222435 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00697 Cpe-Chr1:4038136 Cpe12g00281 Cpe-Chr12:1877593 8.24E-12 dispersed
Cpe03g00139 Cpe-Chr3:698418 Cpe12g00281 Cpe-Chr12:1877593 0 dispersed
Cpe03g00780 Cpe-Chr3:4837761 Cpe12g00281 Cpe-Chr12:1877593 1.93E-151 dispersed
Cpe07g00955 Cpe-Chr7:8667937 Cpe12g00281 Cpe-Chr12:1877593 2.77E-18 dispersed
Cpe08g01144 Cpe-Chr8:8530183 Cpe12g00281 Cpe-Chr12:1877593 0 dispersed
Cpe11g00984 Cpe-Chr11:8320997 Cpe12g00281 Cpe-Chr12:1877593 5.71E-29 dispersed
Cpe12g00281 Cpe-Chr12:1877593 Cpe13g00845 Cpe-Chr13:7449823 4.88E-145 dispersed
Cpe14g00522 Cpe-Chr14:3310171 Cpe12g00281 Cpe-Chr12:1877593 3.65E-13 dispersed
Cpe12g00281 Cpe-Chr12:1877593 Cpe02g01500 Cpe-Chr2:12867068 7.61E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00281 Cpe_Chr12 FPKM 4.02257 5.026015 4.109567 3.69665 6.707992 7.892571 7.27853 6.831467 7.024582 7.026408