Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00288 ATGTGTCACATAGACGCATATAAAAGAGACCCCCACAAAATTGAGAAAAGAACCAAGGTGGCAAAGGAAGGAAAAAATATGCTTGCAGAAGAGAAGTTCCAAAAGTACCCGACAATGGCAGAGGTGCTGGACGAGCTGAAGCAAATGGCTGACATTGGGTTCCCTGTTTTGGCAATCGGCTTAGTGGGCTATCTAAAAAACATGATCTCTGTTATTTGCATGGGCCGGCTTGGCACTCTCCATCTCGCCGCCGGTTCTTTGGCCATCGGCTTCACAAACATAACTGGCTATTCAATTCTCTCAGGCTTAGCCATGGGAATGGAGCCACTCTGCAGCCAGGCCTTTGGCTCTCACAATTCCTCCATTGCGTTTCTCACTTTACAAAGAACGGTTCTCATTTTGCTTTTTGCTAGTATCCCCATTGGGTTTCTTTGGCTCAATTTGGAGCCTCTAATGTTGGTCCTCCACCAGAACCCAGAAATCACTAGAATTGCAGCTGTTTATTGCCGTTTCGCAGTCCCTGATTTGGTATTGAATAGTCTTCTCCACCCTTTGCGTATTTACCTAAGAAACAAAGGCACCACGTGGCTTGTCATGTGGTGTAATTTGTTGGCTATTCTCTTACATGTCCCCATTGCCATTTTCTTGACTTTCTCTCTTGATCTTGGAATCCGTGGGATTGCTATCTCCAATTTTATAGCTAATTTCAATACCCTTTTCTTCCTTTTACTCTATTTGACATTCAACACTCGCAGTACTCTTTCCACCTCCTCTTCCAAGGAGGCTAATCTATTTGTGCCACTGAAAAGCAGCACTGCCGAAAGCGCCGCCACGGTGGGGGAGGATTGGGGAATGCTGATCAAGTTGGCCATTCCTAGCTGTCTAGGAGTCTGCTTGGAATGGTGGTGGTATGAGTTCATGACCATTCTCACTGGGTACCTCTATAACCCGCGGATTGCACTTGCGACTTCAGGCATTGTAATCCAAACAACTTCGCTAATGTACACATTACCAACGGCTCTCAGTGCCGCTGTTTCAACCAGAGTTGGCCACGAGCTTGGTGCCGGCGGGCCCAAAAAGGCCCGACTGGCAGGGGTGGTGGCGATAGGATTGGCCTTGGTGGGCTCATTGATGGGGCTCTCACTGACCACCATCGGCAGAAGGACATGGGGGAGAGTTTTCACAAAAGATGAGGAAATTCTAGAACTGACAATGGCGGTTCTGCCAATAGTCGGGCTGTGCGAGCTAGCAAATTGCCCACAAACAACAAGCTGCGGGATTCTGAGGGGAAGTGCAAGGCCAGGGATCGGAGCAGTAATAAACTTCTGTTCATTTTACATGGTGGGGGCGCCGGTGGCCGTCTTGTCGGCGTTTGTTTGGAAGTTTGGGTTTGTGGGTCTTTGCTATGGGCTTTTGGCAGCTCAGATGGCATGTGTGGTCTCAATCTTAATAGTGGTCTTCAATACAGATTGGGAACTGGAGTCAATCAAAGCCGAAGACTTGGTAGGCAAAAACACCGATAACGTCTTTGTACATGCAAACCACACAGCCATACGTGAGGAAGGTCCTGAATTTCTCAAAGAACCGCCTGTTCAAAAACAAGACACGTAA 1611 47.86 MCHIDAYKRDPHKIEKRTKVAKEGKNMLAEEKFQKYPTMAEVLDELKQMADIGFPVLAIGLVGYLKNMISVICMGRLGTLHLAAGSLAIGFTNITGYSILSGLAMGMEPLCSQAFGSHNSSIAFLTLQRTVLILLFASIPIGFLWLNLEPLMLVLHQNPEITRIAAVYCRFAVPDLVLNSLLHPLRIYLRNKGTTWLVMWCNLLAILLHVPIAIFLTFSLDLGIRGIAISNFIANFNTLFFLLLYLTFNTRSTLSTSSSKEANLFVPLKSSTAESAATVGEDWGMLIKLAIPSCLGVCLEWWWYEFMTILTGYLYNPRIALATSGIVIQTTSLMYTLPTALSAAVSTRVGHELGAGGPKKARLAGVVAIGLALVGSLMGLSLTTIGRRTWGRVFTKDEEILELTMAVLPIVGLCELANCPQTTSCGILRGSARPGIGAVINFCSFYMVGAPVAVLSAFVWKFGFVGLCYGLLAAQMACVVSILIVVFNTDWELESIKAEDLVGKNTDNVFVHANHTAIREEGPEFLKEPPVQKQDT 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1915799 1918269 - Cp4.1LG12g02940.1 Cpe12g00288 478285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00288 536 PANTHER PROTEIN DETOXIFICATION 55 37 507 - -
Cpe12g00288 536 TIGRFAM matE: MATE efflux family protein 65 467 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe12g00288 536 Pfam MatE 292 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe12g00288 536 Pfam MatE 61 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe12g00288 536 CDD MATE_eukaryotic 45 497 IPR045069 GO:0042910|GO:1990961
Cpe12g00288 536 PANTHER MULTIDRUG RESISTANCE PROTEIN 37 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00288 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101220547 924.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00288 Cpe17g00034 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00926 Cpe-Chr6:6826002 Cpe12g00288 Cpe-Chr12:1915799 5.48E-155 dispersed
Cpe12g00288 Cpe-Chr12:1915799 Cpe11g00497 Cpe-Chr11:2903394 6.58E-148 dispersed
Cpe12g00288 Cpe-Chr12:1915799 Cpe17g00034 Cpe-Chr17:226961 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g165 . . . . . . . . Cmo08g01211 Cmo17g00327 . . . . . . . . . . . . . . Cla06g00466 Cam06g0500 Cec06g0502 Cco06g0501 Clacu06g0484 Cmu06g0485 Cre06g1259 . Cone15ag0759 Cone7ag0136 . Lsi05g01410 Csa06g01793 Chy11g01525 . Blo02g00499 . . . . . . . Sed09g0251 . . Cma08g01236 Cma17g00338 . Car17g00311 Cpe12g00288 Cpe17g00034 Bhi12g02039 Tan06g2694 Cmetu11g2071 Lac11g0854 Hepe03g0090 . Lcy12g0748 . . . . . . . Lsi09g01447 . . Cme11g02028
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010702 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00288 Cpe_Chr12 FPKM 8.878345 7.568822 25.607737 25.887901 3.875573 4.285545 3.346701 42.562229 46.613514 46.317513