Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00289 ATGGCCGCCGAGGATGACGATGACGGCGGCGGACTCTTCTCTCCGTCGTCCTTCAAAAGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAGTCATTGTGTTGTTATTTGTCGTTATCCTCATGATTTGTCTTCATCTCTATGTTCGATTATATCTCCTGTCCTCCAGCCGCCGACAATCCCGTAGCCACCGCCGCCGCCGTCGCCGCCGTGTGCAATTTGAATTCACAACCGAGCCTCGAATTGCCGCCGCTTCATCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCCTACCCGTTTTCGTTCACTCGATGAAACCCGACCCGGATCCGGTTTATTGTGCGGTTTGTTTATCGGAGTTTGAAGAGAGTGAAATCGGGCGGACTATTCCCAAATGTAACCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTCAAACCCGTACCTGGATCCGAATCCGGCCCATCTAATGACCCGGTGGAGATAGTTCTTGATGTTTGCGAACCGGGTTCGAGATCTAGCGAGGATGAACCGGTTCGTGAGTGTCCGGTTGAGATGGCGGCATCGGTGGAGCTGGTGGATGTCGAGTTGAGGCCAGTAGCCGACATGTCGGAGACAACGACGAGTTTTGTGAAATCGTTGTCTTTGAAAAGGATTCTAAGTAGAGATGCAACGGAACGGGATCTGGAGAAGGAGGAATCGGCGGCCGTTCGTTGA 759 52.7 MAAEDDDDGGGLFSPSSFKSYALSGKIMLGAVIVLLFVVILMICLHLYVRLYLLSSSRRQSRSHRRRRRRRVQFEFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEESEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPVPGSESGPSNDPVEIVLDVCEPGSRSSEDEPVRECPVEMAASVELVDVELRPVADMSETTTSFVKSLSLKRILSRDATERDLEKEESAAVR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1925852 1926610 + Cp4.1LG12g02840.1 Cpe12g00289 478286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00289 252 SUPERFAMILY RING/U-box 95 163 - -
Cpe12g00289 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
Cpe12g00289 252 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Cpe12g00289 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 189 - -
Cpe12g00289 252 CDD RING-H2_EL5_like 114 156 - -
Cpe12g00289 252 PANTHER RING-H2 FINGER PROTEIN ATL64 19 189 - -
Cpe12g00289 252 SMART ring_2 114 155 IPR001841 -
Cpe12g00289 252 Pfam Ring finger domain 114 156 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00289 - - - cpep:111807290 444.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00289 Cpe-Chr12:1925852 Cpe12g00549 Cpe-Chr12:5602126 5.30E-30 dispersed
Cpe12g00289 Cpe-Chr12:1925852 Cpe17g00036 Cpe-Chr17:239505 2.50E-58 wgd
Cpe12g00289 Cpe-Chr12:1925852 Cpe03g01353 Cpe-Chr3:10962480 1.45E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00289 . 16 192 Rapid Response to Elicitors AT3G16720 50.5 4.5e-39 159.1
Cpe12g00289 . 16 192 Rapid Response to Elicitors AT3G16720 50.5 4.5e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013742 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 0 1 0 2 1 1 0 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00289 Cpe_Chr12 FPKM 1.816326 0.0 3.825143 3.781652 0.0 0.0 0.0 4.956551 4.772577 7.007837