Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00289 ATGGCCGCCGAGGATGACGATGACGGCGGCGGACTCTTCTCTCCGTCGTCCTTCAAAAGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAGTCATTGTGTTGTTATTTGTCGTTATCCTCATGATTTGTCTTCATCTCTATGTTCGATTATATCTCCTGTCCTCCAGCCGCCGACAATCCCGTAGCCACCGCCGCCGCCGTCGCCGCCGTGTGCAATTTGAATTCACAACCGAGCCTCGAATTGCCGCCGCTTCATCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCCTACCCGTTTTCGTTCACTCGATGAAACCCGACCCGGATCCGGTTTATTGTGCGGTTTGTTTATCGGAGTTTGAAGAGAGTGAAATCGGGCGGACTATTCCCAAATGTAACCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTCAAACCCGTACCTGGATCCGAATCCGGCCCATCTAATGACCCGGTGGAGATAGTTCTTGATGTTTGCGAACCGGGTTCGAGATCTAGCGAGGATGAACCGGTTCGTGAGTGTCCGGTTGAGATGGCGGCATCGGTGGAGCTGGTGGATGTCGAGTTGAGGCCAGTAGCCGACATGTCGGAGACAACGACGAGTTTTGTGAAATCGTTGTCTTTGAAAAGGATTCTAAGTAGAGATGCAACGGAACGGGATCTGGAGAAGGAGGAATCGGCGGCCGTTCGTTGA 759 52.7 MAAEDDDDGGGLFSPSSFKSYALSGKIMLGAVIVLLFVVILMICLHLYVRLYLLSSSRRQSRSHRRRRRRRVQFEFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEESEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPVPGSESGPSNDPVEIVLDVCEPGSRSSEDEPVRECPVEMAASVELVDVELRPVADMSETTTSFVKSLSLKRILSRDATERDLEKEESAAVR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1925852 1926610 + Cp4.1LG12g02840.1 Cpe12g00289 478286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00289 252 SUPERFAMILY RING/U-box 95 163 - -
Cpe12g00289 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
Cpe12g00289 252 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Cpe12g00289 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 189 - -
Cpe12g00289 252 CDD RING-H2_EL5_like 114 156 - -
Cpe12g00289 252 PANTHER RING-H2 FINGER PROTEIN ATL64 19 189 - -
Cpe12g00289 252 SMART ring_2 114 155 IPR001841 -
Cpe12g00289 252 Pfam Ring finger domain 114 156 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00289 Cpe-Chr12:1925852 Cpe12g00549 Cpe-Chr12:5602126 5.30E-30 dispersed
Cpe12g00289 Cpe-Chr12:1925852 Cpe17g00036 Cpe-Chr17:239505 2.50E-58 wgd
Cpe12g00289 Cpe-Chr12:1925852 Cpe03g01353 Cpe-Chr3:10962480 1.45E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00289 - - cpep:111807290 444.506