Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00295 | ATGGTGCTGTTTCCGGGAGTTATTGAAGGAATGGTCAGAAACATGTCGATAAAGAAAAAGAGTAATGAAGACGGCGAGAAAGAAGCGGCTCGAGAAATGGCGAAAGAGGCGAAAAGGAACAAATCCATGATTTGTTTATCCGGAAGTGTTAAAACCAGCAAGTTTGATGATATGGCTTATGTTTGCACCAAAAGAGGAAATAAAGGAATCAATCAGGATTCCCTTGTTGTTTGGGAGGACTATGGTTGCCAAGGAGACGTAGTTTTCTGTGGGATCTTTGATGGACATGGTCCTTGGGGCCACATGATTAGCAAACAGGGCCGAAATCTTGTGGTTGCAAATGCTGGCGATTCAAGAGCTGTGTTGGCGGTAACTTCTGATGACGGCTGCTTGAAACCAGTTCAACTCTCCGTTGATTTCAAACCTAATTTGCCAGAGGAAGCTGAGAGAATAAAACAATCGAGAGGGCGAGTGGTATGCTTAAAGGACGAACCGGGGGTCTACAGAGTGTGGACCCCCAACTCGGGCACGCCAGGTTTGGCCATTTCCAGAGCTTTCGGCGATTACTGCACCAAACAGTACGGCCTCATTTCTGTGCCTGATGTTAGCCACCGAACCATTACCTCTGGAGATCAGTTCGTCATTGTGGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCAGTTCATATAGTTTCTTCAACGTCAAATAGGGAAATGTCGGCCAAAAGACTAGTGAATTGTGCTTCTCGTGCATGGAAGTCAAAGAAACGAGGCATTGCAAGAGATGACATGTCAGCTATTTGCCTCTTTTTTAATGCTTCTCTCACAGAAAATGATCGAGATGTAAATATATAG | 864 | 45.37 | MVLFPGVIEGMVRNMSIKKKSNEDGEKEAAREMAKEAKRNKSMICLSGSVKTSKFDDMAYVCTKRGNKGINQDSLVVWEDYGCQGDVVFCGIFDGHGPWGHMISKQGRNLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFKPNLPEEAERIKQSRGRVVCLKDEPGVYRVWTPNSGTPGLAISRAFGDYCTKQYGLISVPDVSHRTITSGDQFVIVATDGVWDVMSNQEAVHIVSSTSNREMSAKRLVNCASRAWKSKKRGIARDDMSAICLFFNASLTENDRDVNI | 287 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1959552 | 1965058 | + | Cp4.1LG12g02870.1 | Cpe12g00295 | 478292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00295 | 287 | PANTHER | PROTEIN PHOSPHATASE 2C 41-RELATED | 1 | 106 | - | - | |
| Cpe12g00295 | 287 | PANTHER | PROTEIN PHOSPHATASE 2C 41-RELATED | 104 | 283 | - | - | |
| Cpe12g00295 | 287 | CDD | PP2Cc | 58 | 274 | IPR001932 | - | |
| Cpe12g00295 | 287 | Pfam | Protein phosphatase 2C | 103 | 248 | IPR001932 | - | |
| Cpe12g00295 | 287 | SMART | PP2C_4 | 46 | 272 | IPR001932 | - | |
| Cpe12g00295 | 287 | SUPERFAMILY | PP2C-like | 56 | 275 | IPR036457 | - | |
| Cpe12g00295 | 287 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 274 | IPR001932 | - | |
| Cpe12g00295 | 287 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 106 | - | - | |
| Cpe12g00295 | 287 | Coils | Coil | 20 | 40 | - | - | |
| Cpe12g00295 | 287 | Gene3D | - | 105 | 277 | IPR036457 | - | |
| Cpe12g00295 | 287 | Gene3D | - | 49 | 104 | IPR036457 | - | |
| Cpe12g00295 | 287 | PANTHER | ALPHABET, ISOFORM E-RELATED | 104 | 283 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00881 | Cpe-Chr7:7926885 | Cpe12g00295 | Cpe-Chr12:1959552 | 3.83E-56 | dispersed | |
| Cpe12g00295 | Cpe-Chr12:1959552 | Cpe16g00480 | Cpe-Chr16:5897634 | 3.34E-80 | dispersed | |
| Cpe18g00029 | Cpe-Chr18:539064 | Cpe12g00295 | Cpe-Chr12:1959552 | 1.16E-58 | dispersed | |
| Cpe11g00894 | Cpe-Chr11:7210013 | Cpe12g00295 | Cpe-Chr12:1959552 | 4.86E-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00295 | - | - | csv:101214034 | 325.865 |