Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00296 ATGACTGATCGACTCGCTCTCCAATTCGCTCATCGTTCTCTCTGCCTAGGGCATTCCGCTTCGCTTCGCATCTCAATCCGCTCCAAGTTTCAGGTTCAGATTGCGTTGCCTTTCTCTTTCTGTAGTGCGCACTCTCCTCTTTGCTCCGGCTCTAGTCTGGTTCTTCGAAGTAAACTCCGGGAGATATCTCCGATCAACGCGTCGTTGAACAGCGGAATGTCGAATTCCATGGTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCCGATTTTGAAGCCATCTTCTCCGGCGGTGATTTCACTTCCGTTTGTGGCTTTGGTTCTCTGCTCTCTGAGAGGAGTGCGCGAAGTACCTTTCCTGAACTGATCAATTTTAGAGTGGCGAGATTGAACGGCTTCAGACGCGAGATCTCAAGCTTGTGTGCGGAGCCTTGCGAAGGAGAGACTATCATTGTGACGGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTTATACAGAGAGAGATTGAGTTTCGATTTCTAGCTGTTCTACCTGAAACATTAGATGGAAAGCTATATGATAAACCAGCGGTGCTTTGTTCTCGATCAACCGATGAGGAATTTTTCCAAGTGAGATGCAAAGGAAATAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATATTGACAAGATCTGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCGACATTGTATTTTAGCTGCAAAAAACCTGGGTGAAACAGCTTATAACAACTTTCTGGATCACACTTTCCTTGGAGATCGTAGTACAACCATCCGTGAATATTTAGCCTCTAGTGGTTCAGGCATTATGGAAGAGGAGCCTCCAGAATCCCTCAAGTTCCGATATGGCGGTTGA 891 45.68 MTDRLALQFAHRSLCLGHSASLRISIRSKFQVQIALPFSFCSAHSPLCSGSSLVLRSKLREISPINASLNSGMSNSMVNEAEPKELRDESDFEAIFSGGDFTSVCGFGSLLSERSARSTFPELINFRVARLNGFRREISSLCAEPCEGETIIVTVFEIKKSEIPAFIQREIEFRFLAVLPETLDGKLYDKPAVLCSRSTDEEFFQVRCKGNKDIFLQHYGRHNIDKIWRDDILPCRVYLRHCILAAKNLGETAYNNFLDHTFLGDRSTTIREYLASSGSGIMEEEPPESLKFRYGG 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1965836 1971054 + Cp4.1LG12g02880.1 Cpe12g00296 478293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00296 296 PANTHER OS05G0358400 PROTEIN 136 296 - -
Cpe12g00296 296 PANTHER OS05G0358400 PROTEIN 65 136 - -
Cpe12g00296 296 PANTHER OS05G0358400 PROTEIN 65 136 - -
Cpe12g00296 296 PANTHER OS05G0358400 PROTEIN 136 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00296 - - - cpep:111778438 471.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00296 Cpe-Chr12:1965836 Cpe17g00041 Cpe-Chr17:265138 1.07E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g140 . . . . . . . . . Cmo17g00335 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01774 Chy11g01538 . . . . . . . . . Sed09g0266 . . . . . Car17g00317 Cpe12g00296 . Bhi12g02025 Tan06g2712 Cmetu11g0157 . Hepe03g0077 . . . . . . . . . Lsi09g01458 . . Cme11g02044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003761 0 5 0 1 1 1 2 1 1 3 1 1 1 3 3 2 1 1 2 1 3 1 1 1 1 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00296 Cpe_Chr12 FPKM 11.125887 7.654566 10.197885 7.917523 17.297028 15.892429 15.715904 9.497247 9.382399 9.982383