Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00300 ATGGCTCTCTTTTGCTTGTGGGGATATTTGAGCCTTTGGGGAATGGATCCGAGCCACACGAAGGGTATGATGCCTACTTCGACTTCAATTTCTGCTAGAAAGGCTGCCGATATGGGTTGTGATCAGTTCCCGGCGGGCCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTGCAGAATTGCTGCTATGCCGTGACGAAATGCAATCGGGCCGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGATTTGATATTGTGTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGTCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCAGATGATGGAAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGACTACCTGATCAAACCGGTTCGAATCGAAGCGCTCAGGAACATATGGCAACATGTGGTTCGGAAGAGAAAGAGCGAATGGAAGGATTTAGAGCAATCTGGAAGCATGGACGATGGAGATCGGGATCAAAATGTATCTGAAGGTGCAAATTATTCATCTTCGGCGTATGATGGAAGTTGGAACAGCTCGAAGAGGAAGAGGGATGCTGAAGAAGAGCTCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAATTTGTCATAGCAGTTGATCAGCTAGGCATTGACAAGGCTGTCCCTAAAAAGATACTGGAGTTGATGAACGTTCCGGGGCTTTCTCGAGAAAACGTTGCGAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCGCCACATCCAAGTAATCTGAACAATTCTTTTATGAACCCTCAAGATCATCCTCCTTTTGGGTCAATGGCTTCATCATACAATGGCATTGATCTTCAGACCCTTTTGGTCACCGGTCAACTCTCGCCGCAAAGTCTCGCTGCCCTCCAAGCCACCGGACTTCGTCGACCTACCGTGAAATCTACCTTGCCGATGGCCCTTGTTGATCAGAACAACATATTCAGCTTTGAAAATCCAAAGCTGAGGTTTGGTGAGGACCAAACACAACACCTGAACAACACTAAACCTGTAAGCTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCACCCTTCTGTGCAGACTCAGAGGAACATGAACATGAACATGAACATGCCACTCAATATCAAGAGCGAACATGGTGGCACTCAGCTAATGCATTTGTCTCAGCAGCAAACTGTAGGACAGACTCTAAATAACTCTACTGTTGCCCACCACCTACCTGGAATTCCATCGACATTAAGGAACCCGATCATATCAGGTAGCGTTACAACGGGAAACGGGACTGCTGATAATAGCCACGTGCCTCGATACAACCTAGTTTCGCCCACGTCGGTTATGGTGAACTATCCAATGAGCCAAACCACAGAAGTGTTTCAAGAAGAAATGAACTCAAATCTAAAAGTATCGAGCGGAGTAATGTCGAGTTATGGTGTTTTTAGTGACTTGCATATGCAGAAATCCCATGACTGGGATTCTCAAAATGTAAGCACTTTGGCCTTTGGTACTCCACACCATGGAAACTTCATTCACCATAGCTTTGATATCTCACCCTCATCTTTGATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGAGAGAATCATAACTCATCAGTCAATGGGAAGACGAACTTTTCGTTTTTGGATTCAACTCAACCCGGGATTCCTCAAAGTGTCGCCCATAACTCGTTTTTCGATCCCGGGGAGGTCAAGAACCAGATCATCCCTGATGCAAGCTATCAAACTGACCTGTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAAGAACAACAAGAAGACAACGGATCGGTCGACTTTAGCGGATACAAAACGGAGAATATTTGTGTTTAG 2016 45.39 MALFCLWGYLSLWGMDPSHTKGMMPTSTSISARKAADMGCDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKSEWKDLEQSGSMDDGDRDQNVSEGANYSSSAYDGSWNSSKRKRDAEEELEERDDTSTLKKPRVVWSVELHQQFVIAVDQLGIDKAVPKKILELMNVPGLSRENVASHLQKYRLYLRRLSGVSPHPSNLNNSFMNPQDHPPFGSMASSYNGIDLQTLLVTGQLSPQSLAALQATGLRRPTVKSTLPMALVDQNNIFSFENPKLRFGEDQTQHLNNTKPVSLFHGIPTKMEPKQLANMQHPSVQTQRNMNMNMNMPLNIKSEHGGTQLMHLSQQQTVGQTLNNSTVAHHLPGIPSTLRNPIISGSVTTGNGTADNSHVPRYNLVSPTSVMVNYPMSQTTEVFQEEMNSNLKVSSGVMSSYGVFSDLHMQKSHDWDSQNVSTLAFGTPHHGNFIHHSFDISPSSLIHHGFPSSQTNGENHNSSVNGKTNFSFLDSTQPGIPQSVAHNSFFDPGEVKNQIIPDASYQTDLLSEDFGQDELLGVFLKQEQQEDNGSVDFSGYKTENICV 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1997163 2003088 + Cp4.1LG12g03000.1 Cpe12g00300 478297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00300 671 MobiDBLite consensus disorder prediction 204 222 - -
Cpe12g00300 671 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Cpe12g00300 671 MobiDBLite consensus disorder prediction 170 187 - -
Cpe12g00300 671 SUPERFAMILY CheY-like 46 170 IPR011006 -
Cpe12g00300 671 Gene3D - 224 286 - -
Cpe12g00300 671 Pfam Response regulator receiver domain 49 157 IPR001789 GO:0000160
Cpe12g00300 671 MobiDBLite consensus disorder prediction 170 222 - -
Cpe12g00300 671 MobiDBLite consensus disorder prediction 188 203 - -
Cpe12g00300 671 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Cpe12g00300 671 SMART REC_2 47 159 IPR001789 GO:0000160
Cpe12g00300 671 Pfam Myb-like DNA-binding domain 229 279 IPR001005 -
Cpe12g00300 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 506 645 IPR045279 GO:0009736
Cpe12g00300 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 506 IPR045279 GO:0009736
Cpe12g00300 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 283 IPR017930 -
Cpe12g00300 671 CDD REC_typeB_ARR-like 49 163 - -
Cpe12g00300 671 PIRSF RR_ARR_type-B 25 656 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe12g00300 671 ProSiteProfiles Response regulatory domain profile. 48 163 IPR001789 GO:0000160
Cpe12g00300 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 506 645 - -
Cpe12g00300 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 506 - -
Cpe12g00300 671 Gene3D - 47 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01344 Cpe12g00300 CCT
Cpe08g00165 Cpe12g00300 CCT
Cpe03g01344 Cpe12g00300 ECH
Cpe08g00165 Cpe12g00300 ECH
Cpe12g00300 Cpe17g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01298 Cpe-Chr4:10690459 Cpe12g00300 Cpe-Chr12:1997163 4.52E-56 dispersed
Cpe11g00049 Cpe-Chr11:251288 Cpe12g00300 Cpe-Chr12:1997163 5.45E-95 dispersed
Cpe12g00300 Cpe-Chr12:1997163 Cpe18g00551 Cpe-Chr18:6077369 8.22E-85 dispersed
Cpe17g00337 Cpe-Chr17:2401495 Cpe12g00300 Cpe-Chr12:1997163 6.01E-32 dispersed
Cpe12g00300 Cpe-Chr12:1997163 Cpe17g00047 Cpe-Chr17:301283 0 wgd
Cpe12g00300 Cpe-Chr12:1997163 Cpe17g00768 Cpe-Chr17:6046302 6.58E-12 wgd
Cpe12g00300 Cpe-Chr12:1997163 Cpe03g01344 Cpe-Chr3:10903145 0 wgd
Cpe12g00300 Cpe-Chr12:1997163 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50301 PF00072 Response_reg 7.70E-22 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00300 - K14491 cmos:111460165 1303.12