Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00309 ATGAAAATCAACATCGATAGGGAGGCACGAAAAGTTGCGGTTGATAATCGAATTCCTCTCCGGAATTACTTCCGGATCGCCGATAATCTCTTAAAACAGGCTGATATTTATCGGGAGGAGAATAATGTTGTGGATTTGTTCATTATACTTCTTAGGTTTTCAAGCTTGGTTTCCGAAACCATACCACGGCATCGTGATTACCAGGCTTTTTTCCCAAAGGAGAAGATATTTTACAAGAAGAAACTGCTGAGTGTAGTAGATGAACTTGAGTCCTTGAAACCTGAATTTGATCGCCGAGTAAATGAACTGGAGAAAGTGTCTGGACGGCCTCGTCTTCCTCTATCCGATGAGCAGGGAGGAGTTTCAAACAGTCTGCGGCCGTCTTCTATGATACAGCCCTATGCAAATGGAAACTATTCATTGGCCTTGGATCAAAAGCAGCCACAATCTTCATGGAGGTATCATGATGGCCGAGGTCAAGTTTCTCAATCAAGTTACTCAAGGATTGAGAATAGGTTATCAAATCTGTCTCTTAATGTACCACTTCCGAAACCCGAAACTCTGTCTAGACACTCTATTTTGGGACCTAGTGGTTTTCAGGGCCAATGGAAGGGACCAAGTACAGATAAGATTCACTATCCAAGAAATCAGGACTTTACTCCTTTAGATTCAAGACTGAATCAAATTGAACAATGTGATCTAGTGGCGCATAAAGATAGTGGTCCAGGAGGTGTCGTGTCGATGATGGAATCAGTGCTCTCACTAGATGATGGTAGATGGCCTCATCCTGCAGACATATCTATTACTCCATTGATAACAGAAGTAAGGGAGGATCCTTTCCCATTGGTTAAACAACCTCCTCCTCCTCCTGTTCTTGCAAAGGTTCAGCAGGAATATGCGGCAATTCCCCCATCTAAAGTTGCGGATCCAAGGCCTGGAGTGGCAAAACAATCGATGGATGAGTCCGAGTCGTTCCAACGTTTACACATTCCAGTAAAAATGCTGGATGATTTCTTGAGATTGGCTCGAGAAAATACAAATAAGAATCTGGAGACTTGTGGTGTTCTAGCTGGCTCTCTGAAAAACAGGGTTTTTTACATATCTACGCTCATAATCCCAAAGCAAGAATCAACATCAGATTCCTGCCAGACGTTGAACGAAGAGGAAATATTCGAGGTTCAAGACAGATTATCACTTTTTCCCCTTGGTTGGATCCATACACATCCATCACAAACCTGTTTCATGTCATCTGTGGATTTGCACACGCATTACTCGTACCAGTTTCTTTGGCCTCTTTTAAGGAGATTTTCGCTTCTTCAGATTATGCTACCAGAAGCGATTGCAATCGTCATGGCTCCAACCGATGCGTCAAGCCCATATGGAATATTTCATTTGTCCGACCCAGGTGGCGTGTCGGTCATCCGCAACTGCCAACAACGTGGATTTCATCCCCACGAGGAGCCTGAAGATGGGAGTCCACTCTATGAACACTGCTCTCATGTTTTGATGAATCCGAATGCGAAGTTTGACGTTATCGACTTGAGGTAA 1548 43.6 MKINIDREARKVAVDNRIPLRNYFRIADNLLKQADIYREENNVVDLFIILLRFSSLVSETIPRHRDYQAFFPKEKIFYKKKLLSVVDELESLKPEFDRRVNELEKVSGRPRLPLSDEQGGVSNSLRPSSMIQPYANGNYSLALDQKQPQSSWRYHDGRGQVSQSSYSRIENRLSNLSLNVPLPKPETLSRHSILGPSGFQGQWKGPSTDKIHYPRNQDFTPLDSRLNQIEQCDLVAHKDSGPGGVVSMMESVLSLDDGRWPHPADISITPLITEVREDPFPLVKQPPPPPVLAKVQQEYAAIPPSKVADPRPGVAKQSMDESESFQRLHIPVKMLDDFLRLARENTNKNLETCGVLAGSLKNRVFYISTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQFLWPLLRRFSLLQIMLPEAIAIVMAPTDASSPYGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVLMNPNAKFDVIDLR 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2034254 2039753 - Cp4.1LG12g03110.1 Cpe12g00309 478306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00309 515 SUPERFAMILY JAB1/MPN domain 327 468 - -
Cpe12g00309 515 ProSiteProfiles MPN domain profile. 328 469 IPR037518 -
Cpe12g00309 515 Gene3D Cytidine Deaminase, domain 2 313 515 - -
Cpe12g00309 515 MobiDBLite consensus disorder prediction 109 129 - -
Cpe12g00309 515 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 2 515 - -
Cpe12g00309 515 PANTHER AMSH-LIKE PROTEASE 2 515 - -
Cpe12g00309 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 324 427 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe12g00309 515 Coils Coil 86 106 - -
Cpe12g00309 515 CDD MPN_AMSH_like 328 515 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cpe12g00309 515 SMART pad1_6 327 468 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe12g00309 515 Pfam USP8 dimerisation domain 8 99 IPR015063 -
Cpe12g00309 515 Gene3D - 3 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00309 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - csv:101209152 891.338
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00309 Cpe17g00053 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00309 Cpe-Chr12:2034254 Cpe20g00126 Cpe-Chr20:697637 8.22E-156 dispersed
Cpe11g00006 Cpe-Chr11:41664 Cpe12g00309 Cpe-Chr12:2034254 7.47E-07 transposed
Cpe12g00309 Cpe-Chr12:2034254 Cpe17g00053 Cpe-Chr17:337594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00309 Cpe_Chr12 FPKM 13.65075 14.004187 27.486736 28.191364 15.337922 12.98739 13.88916 35.748291 33.629757 30.996496