Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00311 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCAGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGAGTTCTCCATCCACGTCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTACTCATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGGCTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGATGAACGAGCCTCTCAAACCTGCTATGACTAAAGAAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAACTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTCGTTGGACAATTTGTTAAATAATGGATTGCAAAGTCAGGACAGCTTAGGACAATGGATAAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCAATCTTCAGTGGAGCAAATTTTTAACATAACTGAGGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACGAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCAAAATCCAATATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTAGAACCACATTCACCGGGACTTGTACATTTATACCTGAGCTTAGATGGTCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACTTCAGAACAGATCCTCAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTGCCCTGAATGAGGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACATGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGACTGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCGAAGCCAAGCTTGATCACTGATCCCACATCAAAGAATCCTCTGGGATATACAGCAGCAGATCTTGCATCCATGAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCGCATTTTGAAGACATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAGTACAATACCCGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAACATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTATTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCGCGTATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGCACCAGCTGAAGTGACAGAAGATCAGGAAACTGGCATGGAAGAGGACTTCTACCGCGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATATGAAGAGCTTTCACATCCTGATATGAAACTGAATGGCTGA 2739 41.77 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSVGGNELSEPSDTTTVMAHEQRLHEINTLEWDELLVMNEPLKPAMTKEDKLSCFDQQNQVPINVANKIFGVITSFNNPVESTGSANSIGSVNMSLMGGQTNLNVESRESIPINSLDNLLNNGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHQSSVEQIFNITEVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSNISVVCGDTSINADFVQPGVYRCLVEPHSPGLVHLYLSLDGHKPISQVLNFEYRAPLLQVPEVTSEQILKWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNEAKKLAVKTSGISDGWIYLLKSVTENKTPIPHAREGVLEMILRSRLRDWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASMNGFNGLAAYLSEKALVSHFEDMSLAGNVSGSLETSTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEDQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKLNG 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2056191 2067298 + Cp4.1LG12g03040.1 Cpe12g00311 478308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00311 912 ProSiteProfiles Ankyrin repeat region circular profile. 600 625 - -
Cpe12g00311 912 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 749 775 IPR000048 GO:0005515
Cpe12g00311 912 SUPERFAMILY Ankyrin repeat 562 662 IPR036770 -
Cpe12g00311 912 Pfam IQ calmodulin-binding motif 790 809 IPR000048 GO:0005515
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 765 792 IPR000048 GO:0005515
Cpe12g00311 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 906 - -
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 788 812 IPR000048 GO:0005515
Cpe12g00311 912 Gene3D Immunoglobulins 356 453 IPR013783 -
Cpe12g00311 912 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Cpe12g00311 912 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cpe12g00311 912 MobiDBLite consensus disorder prediction 149 169 - -
Cpe12g00311 912 Gene3D - 766 812 - -
Cpe12g00311 912 SMART ANK_2a 600 629 IPR002110 GO:0005515
Cpe12g00311 912 SMART ANK_2a 639 668 IPR002110 GO:0005515
Cpe12g00311 912 SMART iq_5 711 733 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 865 887 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 787 809 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 764 786 IPR000048 GO:0005515
Cpe12g00311 912 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cpe12g00311 912 Pfam Ankyrin repeats (3 copies) 562 628 IPR002110 GO:0005515
Cpe12g00311 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 906 - -
Cpe12g00311 912 Gene3D - 521 663 IPR036770 -
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 867 895 IPR000048 GO:0005515
Cpe12g00311 912 Pfam IPT/TIG domain 364 449 IPR002909 -
Cpe12g00311 912 SUPERFAMILY E set domains 363 450 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00311 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1504.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00311 Cpe17g00057 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00967 Cpe-Chr1:5734949 Cpe12g00311 Cpe-Chr12:2056191 2.44E-124 dispersed
Cpe12g00311 Cpe-Chr12:2056191 Cpe14g00612 Cpe-Chr14:3876868 2.07E-119 dispersed
Cpe12g00311 Cpe-Chr12:2056191 Cpe17g00057 Cpe-Chr17:356934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50305 PF03859 CG-1 2.20E-45 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00311 Cpe_Chr12 FPKM 0.0 0.0 1.152431 0.0 1.80052 1.701533 1.630879 3.510167 3.93417 4.403553