Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00311 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCAGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGAGTTCTCCATCCACGTCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTACTCATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGGCTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGATGAACGAGCCTCTCAAACCTGCTATGACTAAAGAAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAACTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTCGTTGGACAATTTGTTAAATAATGGATTGCAAAGTCAGGACAGCTTAGGACAATGGATAAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCAATCTTCAGTGGAGCAAATTTTTAACATAACTGAGGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACGAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCAAAATCCAATATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTAGAACCACATTCACCGGGACTTGTACATTTATACCTGAGCTTAGATGGTCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACTTCAGAACAGATCCTCAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTGCCCTGAATGAGGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACATGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGACTGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCGAAGCCAAGCTTGATCACTGATCCCACATCAAAGAATCCTCTGGGATATACAGCAGCAGATCTTGCATCCATGAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCGCATTTTGAAGACATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAGTACAATACCCGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAACATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTATTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCGCGTATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGCACCAGCTGAAGTGACAGAAGATCAGGAAACTGGCATGGAAGAGGACTTCTACCGCGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATATGAAGAGCTTTCACATCCTGATATGAAACTGAATGGCTGA 2739 41.77 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSVGGNELSEPSDTTTVMAHEQRLHEINTLEWDELLVMNEPLKPAMTKEDKLSCFDQQNQVPINVANKIFGVITSFNNPVESTGSANSIGSVNMSLMGGQTNLNVESRESIPINSLDNLLNNGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHQSSVEQIFNITEVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSNISVVCGDTSINADFVQPGVYRCLVEPHSPGLVHLYLSLDGHKPISQVLNFEYRAPLLQVPEVTSEQILKWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNEAKKLAVKTSGISDGWIYLLKSVTENKTPIPHAREGVLEMILRSRLRDWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASMNGFNGLAAYLSEKALVSHFEDMSLAGNVSGSLETSTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEDQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKLNG 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2056191 2067298 + Cp4.1LG12g03040.1 Cpe12g00311 478308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00311 912 ProSiteProfiles Ankyrin repeat region circular profile. 600 625 - -
Cpe12g00311 912 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 749 775 IPR000048 GO:0005515
Cpe12g00311 912 SUPERFAMILY Ankyrin repeat 562 662 IPR036770 -
Cpe12g00311 912 Pfam IQ calmodulin-binding motif 790 809 IPR000048 GO:0005515
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 765 792 IPR000048 GO:0005515
Cpe12g00311 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 906 - -
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 788 812 IPR000048 GO:0005515
Cpe12g00311 912 Gene3D Immunoglobulins 356 453 IPR013783 -
Cpe12g00311 912 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Cpe12g00311 912 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cpe12g00311 912 MobiDBLite consensus disorder prediction 149 169 - -
Cpe12g00311 912 Gene3D - 766 812 - -
Cpe12g00311 912 SMART ANK_2a 600 629 IPR002110 GO:0005515
Cpe12g00311 912 SMART ANK_2a 639 668 IPR002110 GO:0005515
Cpe12g00311 912 SMART iq_5 711 733 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 865 887 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 787 809 IPR000048 GO:0005515
Cpe12g00311 912 SMART iq_5 764 786 IPR000048 GO:0005515
Cpe12g00311 912 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cpe12g00311 912 Pfam Ankyrin repeats (3 copies) 562 628 IPR002110 GO:0005515
Cpe12g00311 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 906 - -
Cpe12g00311 912 Gene3D - 521 663 IPR036770 -
Cpe12g00311 912 ProSiteProfiles IQ motif profile. 867 895 IPR000048 GO:0005515
Cpe12g00311 912 Pfam IPT/TIG domain 364 449 IPR002909 -
Cpe12g00311 912 SUPERFAMILY E set domains 363 450 IPR014756 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00311 Cpe17g00057 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00967 Cpe-Chr1:5734949 Cpe12g00311 Cpe-Chr12:2056191 2.44E-124 dispersed
Cpe12g00311 Cpe-Chr12:2056191 Cpe14g00612 Cpe-Chr14:3876868 2.07E-119 dispersed
Cpe12g00311 Cpe-Chr12:2056191 Cpe17g00057 Cpe-Chr17:356934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50305 PF03859 CG-1 2.20E-45 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00311 K21596 - csv:101211298 1504.58