Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00317 ATGGCATTTTGGTGGACTCTGCTTGTAATAGGATTTGCTTACGCGATCTGTAGGTTACTCTTGATGCTCATCCCTCCGAATGTGCCTTCAATCGAAGTTGACGCATCTGATGTGATGGACGACGGTAATCAGACGCAGGAGAATAGCTACATCTACATTCCACCTAGAGTAAGGACACAGCAGCAAGACAAGCGAGTCCAATGTTACGAGCCTGCAACTATGAAATACCTGGGCTATTTTCCTGCATTGTCACGAGACGAGGTCAATGATCGTGTTGCTTCAGCCAGGAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTTAAGCAAAGGCGTTTGCTTTTACGCATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATCTCCTCCCGTGACACTGGAAAGACAATAGTGGATGCTAATATGGGAGAAATAATGGCAACATGTGAAAAGATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCAGATCATGTGGAAGGGCAACACTTCACAAGAAAGCTCGCGTAGAATTTCATCCCCTTGGAGTTATTGGTGCAATAGTCCCATGGAACTATCCATTTCATAACATTTTCAATCCAGTTTCAGAACATGCAAGTTGGTCAGGATGCTTCTATGTCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTGGTCGATGTCATAACAGGGTTTGCTGAAACAGGTGAAGCTCTAGTATCTTCAGTGGACAAAATGATATTCGTTGGATCTACTGGTGTGGGTAGGATGATAATGAAAAGTGCTGCTGAGACACTCATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATCGTGTGTGAGGATGTAGATCTTGATCATGTTGTAAACGTTGCTCTCAGGGCTTCTATTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCTTCGTTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTCAAAATGTATTTGTGGTTGAATATTCATGCCTCATCTATTTTGGTGGTTGTATGCCATGGTGGTGCCATATTGTATCTATTGGTCCACCATTAGCTGGGAAGTATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTCGTAAATGATGCCTTAGACAGGGGGGCAAAAATTGTTGCTCGTGGAACTTTTGGACATTTACCTGAAGGTGCCGTTGATCAATATTTTCCACCTACCGTTATTGTTGACGTCAACCATACCATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCCATAATGAAATTCAGCACAGATGATGAAGCCGTGAGGCTTGCAAATGATTCAAGATTTGGGCTCGGCTGTGCTGTCTTTTCTGGCAGTCAGCGTCGTGCCAAGAATATTGCTTCGCAGATACGTTCTGGAAGTGTTGCAATTAATGACTTCGCCACAAATTATTTATGTCAGTCCTTGCCATTTGGTGGCGTGAAAGAGAGTGGATTTGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTCGTCAAAGCAGTCGTTGAAGATAGGTGGTGGCCATACATTCAGACTAAGCATCCTAAGCCTCTTACGTATCCTGTGGCAGACAATGCTTTCGAGTTTCAAATGTCGCTCGTTGAAGCAACATACGGGCTGAACATATGGGATCGATTAAGAGCATTGGTCAATGTCCTAAAGATGCTTTCCGAGCAGAACACTCTGGCTAAAGACAACTCTGCCGTTGATGATGGAAGTAAGAGAGCTGATTGA 1851 43.6 MAFWWTLLVIGFAYAICRLLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRVRTQQQDKRVQCYEPATMKYLGYFPALSRDEVNDRVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRDTGKTIVDANMGEIMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVSEHASWSGCFYVRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKSAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASITSSGHNCTGAERFYVHKNIYSSFVDKISERVKAITVQNVFVVEYSCLIYFGGCMPWWCHIVSIGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVRLANDSRFGLGCAVFSGSQRRAKNIASQIRSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEATYGLNIWDRLRALVNVLKMLSEQNTLAKDNSAVDDGSKRAD 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2101994 2110553 - Cp4.1LG12g03290.1 Cpe12g00317 478314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00317 616 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 575 - -
Cpe12g00317 616 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 283 290 IPR029510 GO:0016491
Cpe12g00317 616 Pfam Aldehyde dehydrogenase family 61 349 IPR015590 GO:0016491
Cpe12g00317 616 Pfam Aldehyde dehydrogenase family 372 540 IPR015590 GO:0016491
Cpe12g00317 616 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 30 286 IPR016162 GO:0016491
Cpe12g00317 616 SUPERFAMILY ALDH-like 49 542 IPR016161 GO:0016491
Cpe12g00317 616 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 575 - -
Cpe12g00317 616 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 545 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00317 - - - csv:101209796 1086.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00317 Cpe17g00066 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00317 Cpe-Chr12:2101994 Cpe18g00825 Cpe-Chr18:7639618 4.11E-64 dispersed
Cpe12g00317 Cpe-Chr12:2101994 Cpe17g00066 Cpe-Chr17:391085 1.03E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g75 . Blo12g00082 Bda03g01176 . Bpe04g01114 . Bma04g01129 . Cmo08g01242 Cmo17g00356 . . . . . . . . . . . . . . Cla06g00431 Cam06g0457 Cec06g0463 Cco06g0462 Clacu06g0444 Cmu06g0445 Cre06g1221 Cone14ag0722 Cone15ag0731 . . . Csa06g01741 Chy11g01565 . . . . . . . . . Sed04g3106 . . Cma08g01274 Cma17g00366 Car08g01144 Car17g00339 Cpe12g00317 Cpe17g00066 Bhi12g01925 Tan06g2751 Cmetu11g1721 Lac11g0932 Hepe03g0048 . Lcy12g0802 . . . . . . . . . . Cme11g02077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01139 . 6 495 Aldehyde Dehydrogenase Gene Family AT3G24503 69.0 3.0e-205 711.8
Cpe18g00444 . 1 472 Aldehyde Dehydrogenase Gene Family AT3G24503 67.0 3.1e-194 675.2
Cpe11g00003 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.8e-160 562.0
Cpe07g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.2e-159 558.5
Cpe04g01548 . 33 494 Aldehyde Dehydrogenase Gene Family AT3G24503 54.0 3.4e-145 512.3
Cpe07g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 7.2e-250 860.1
Cpe11g00003 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 1.7e-246 849.0
Cpe04g01548 . 9 496 Aldehyde Dehydrogenase Gene Family AT3G48000 80.2 6.6e-243 837.0
Cpe04g01139 . 17 495 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 1.0e-155 547.4
Cpe18g00444 . 18 472 Aldehyde Dehydrogenase Gene Family AT3G48000 51.3 4.1e-144 508.8
Cpe07g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.6e-169 592.8
Cpe11g00003 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.4 1.4e-168 589.7
Cpe04g01548 . 7 342 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 7.1e-157 550.8
Cpe04g01139 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 53.8 4.2e-101 365.5
Cpe02g00556 CCT,ECH 22 529 Aldehyde Dehydrogenase Gene Family AT4G34240 60.2 3.8e-174 608.6
Cpe06g00619 CCT,ECH 7 465 Aldehyde Dehydrogenase Gene Family AT4G34240 59.7 6.0e-164 574.7
Cpe06g00618 . 3 517 Aldehyde Dehydrogenase Gene Family AT4G34240 56.0 1.9e-162 569.7
Cpe02g00556 CCT,ECH 117 527 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 1.4e-176 616.3
Cpe06g00618 . 108 515 Aldehyde Dehydrogenase Gene Family AT1G44170 69.3 3.5e-167 585.1
Cpe06g00619 CCT,ECH 72 465 Aldehyde Dehydrogenase Gene Family AT1G44170 66.9 4.3e-157 551.6
Cpe05g00500 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 2.0e-117 419.9
Cpe14g00552 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.7 5.3e-183 637.9
Cpe05g00500 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.7e-157 553.1
Cpe16g00704 CCT 39 638 Aldehyde Dehydrogenase Gene Family AT1G79440 64.1 3.9e-216 748.0
Cpe05g01029 CCT 39 469 Aldehyde Dehydrogenase Gene Family AT1G79440 60.6 5.4e-165 578.2
Cpe04g00361 . 12 591 Aldehyde Dehydrogenase Gene Family AT2G14170 65.2 2.4e-209 725.7
Cpe10g00532 . 56 459 Aldehyde Dehydrogenase Gene Family AT2G14170 69.1 9.7e-171 597.4
Cpe18g00825 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.8e-250 862.1
Cpe18g00825 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 1.3e-253 872.5
Cpe07g00985 . 1 390 Aldehyde Dehydrogenase Gene Family AT2G24270 66.9 1.2e-177 620.2
Cpe07g01153 . 2 371 Aldehyde Dehydrogenase Gene Family AT2G24270 68.1 1.5e-177 619.8
Cpe20g00200 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 5.9e-263 903.7
Cpe12g00317 CST 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 72.1 9.8e-264 906.4
Cpe17g00066 CST 1 517 Aldehyde Dehydrogenase Gene Family AT3G66658 65.0 9.5e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007085 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00317 Cpe_Chr12 FPKM 5.007134 4.521277 5.573187 6.626909 5.556564 6.02657 4.976612 12.513172 13.557762 15.340727