Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00324 TGGAATCTCTCGTCTCTCTGCTGTGGATTTGGAGTTGTGCTTGTTGATTTGATGATTGTTTTTGAGGAAGGGAGAGATTTGGAAGATCGGAGATTACGCCAGTGGGAAGTGTTGAATATTGATCCGTTGTTGTTGGTTTTTATGGGAACTCCACCAGTAGAGGAGCTTCTGAGGAAGATACAAGAGCTGGAGGAAGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCGGATTCCAATTCTGACCACCAAATTCGCCACCATCATCATCACCATCAGCGTTCTCAATCGATATCGCCTCAGCGTTCTAGGTTTGCTACGGCTCGGAGAAGAGGCGGCGCTGCTGGAGGTTTCGACGGCGCTGCAGCTGCGTGGAAGAGAGGCTCTTCGTCGTTTCGATATTCTTCTCCACTTCAGAGAGAGAGTAGGACTTGTGAGCCTCTAAATGCTGCCGCCAGTGTCGGAACCGGCGGTGGCTCTGGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAATTATCGCATAATTTATTGGAACCGAGCTGCTGAAAGCGTGTATGGATATTCTGCGGTGGAGGCTCTTGGTCAAGACGCCATTGAGCTTCTAATCGATCCCGAGGACTTCGCCGTTGCGAATGATGTAACTCTTCGTGTCATGGGTGGGGAGAATTGGACTGGTCAATTACCTGTAAAGAACAAGATGGGGCAAAAATTTATGGTTGTTGCCACTAACACTCCATTCTATGACGATGGTGCATTGGTTGGGATTATCTGTGTATCAAGTGATTCACGGCCATTTCAAGAATTGAAGGTTCTTTTAGCATCAGGTTCTAAACAGCAGGATGCAGATTCGAACACGATCCGTTCAAGAATCCCGGTTTCAGCTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAATTGCAATTGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGTTTGGATCGTGAAGGTGGAAGTGCAGATAGTTACCACTCTGATCATGGCTTTCCAGATGCAGTTCTTTGTGACAATCGGGAGGATGCAAATTCAAGTGGAGCTAGCACGCCTCGGGGCGATTCCACGGCTCATGGTGCGTTATCCCATGTTGAGGAGAAGTTGTCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTGTAGGAAAACCTACAATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATCACTAAGAAAGGCATATCTTGGCCATGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAGAACAACCCGTATTGTTTGGCCCTGGGTACAAATTGATCAAGAAGCTGAACCAGCAAATCATAGAAGTTCTTCTTCATCTGTGAAACCAGATATGCAGCAAAACGATGGTCATCGAGCAGTCAATAACGAGGCGTCGGGATCTTGGTCATCATTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTGCCAGTAGTAGTGCTATCAACAAGGTTGACACGGACTTCGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTATCTCCTTCGGACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAACATTCTTCTCTTCATGGGAGTTGTGACTTCACCTCAGCGTCTCTGTATTGTCACAGAATTTCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACGGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACGTTGCGAGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTCTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACGACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTATGTGCTAATAAGTCTGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATACAATGCAGTGAACCCGCAAACCGGCCATCATTCCAGGTTCTGATGGAAAGGCTTAGAGAACTGCATAGAAAGTTTACTATTCAATTACAAGCAGCCCGTAACGGTGGAGATAATATCAGCCAAAAGGAAACATAA 2412 45.73 WNLSSLCCGFGVVLVDLMIVFEEGRDLEDRRLRQWEVLNIDPLLLVFMGTPPVEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIRHHHHHHQRSQSISPQRSRFATARRRGGAAGGFDGAAAAWKRGSSSFRYSSPLQRESRTCEPLNAAASVGTGGGSGPAAVNFTNKQYLNILQSMGQSVHIFDLNYRIIYWNRAAESVYGYSAVEALGQDAIELLIDPEDFAVANDVTLRVMGGENWTGQLPVKNKMGQKFMVVATNTPFYDDGALVGIICVSSDSRPFQELKVLLASGSKQQDADSNTIRSRIPVSAKLGLDPQQPLQIAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSADSYHSDHGFPDAVLCDNREDANSSGASTPRGDSTAHGALSHVEEKLSGKLVRDSGDEVVGKPTIQKILSSKAEEWITKKGISWPWKGTEQEGGSETRTTRIVWPWVQIDQEAEPANHRSSSSSVKPDMQQNDGHRAVNNEASGSWSSFNVNSTSSVSSCGSASSSAINKVDTDFDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVIISFGQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDVARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKYVLISLTYTVLESYCGSLQPRRSLGKISIQCSEPANRPSFQVLMERLRELHRKFTIQLQAARNGGDNISQKET 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2140956 2147125 + Cp4.1LG12g03200.1 Cpe12g00324 478321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00324 803 Coils Coil 53 73 - -
Cpe12g00324 803 SUPERFAMILY Protein kinase-like (PK-like) 541 779 IPR011009 -
Cpe12g00324 803 Gene3D Transferase(Phosphotransferase) domain 1 630 798 - -
Cpe12g00324 803 SMART serkin_6 552 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00324 803 MobiDBLite consensus disorder prediction 349 403 - -
Cpe12g00324 803 ProSiteProfiles Protein kinase domain profile. 552 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00324 803 MobiDBLite consensus disorder prediction 349 368 - -
Cpe12g00324 803 MobiDBLite consensus disorder prediction 85 126 - -
Cpe12g00324 803 Pfam PAS fold 178 283 IPR013767 GO:0006355
Cpe12g00324 803 SUPERFAMILY PYP-like sensor domain (PAS domain) 179 286 IPR035965 -
Cpe12g00324 803 SMART pas_2 177 244 IPR000014 -
Cpe12g00324 803 Pfam Protein tyrosine and serine/threonine kinase 552 726 IPR001245 GO:0004672|GO:0006468
Cpe12g00324 803 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 84 736 - -
Cpe12g00324 803 Gene3D Phosphorylase Kinase; domain 1 545 629 - -
Cpe12g00324 803 MobiDBLite consensus disorder prediction 479 508 - -
Cpe12g00324 803 ProSiteProfiles PAS repeat profile. 175 246 IPR000014 -
Cpe12g00324 803 MobiDBLite consensus disorder prediction 386 400 - -
Cpe12g00324 803 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 84 736 - -
Cpe12g00324 803 Gene3D PAS domain 187 289 - -
Cpe12g00324 803 TIGRFAM sensory_box: PAS domain S-box protein 177 286 IPR000014 -
Cpe12g00324 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 671 683 IPR008271 GO:0004672|GO:0006468
Cpe12g00324 803 MobiDBLite consensus disorder prediction 477 508 - -
Cpe12g00324 803 CDD PAS 186 286 IPR000014 -
Cpe12g00324 803 CDD STKc_MAP3K-like 558 777 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00324 Cpe17g00068 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00324 Cpe-Chr12:2140956 Cpe20g00145 Cpe-Chr20:821271 5.06E-77 dispersed
Cpe12g00324 Cpe-Chr12:2140956 Cpe17g00068 Cpe-Chr17:406723 1.18E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62747 PF07714 PK_Tyr_Ser-Thr 2.40E-45 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00324 - - bhj:120067055 1199.88